Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01963 ATGAACATTGTCTATATATATGGCTTGATGCAGCATGTACCAATTAAGTTTTTCAAAAAGTATATTGGAAACGTGAAGAAGCAAGTGATGACAATGTTACAGTTTAGAAAGACATTGTGGCCTGTGAAGCTTGTACTTCATGGACGTGGTTATTCAGTCTCGTTTTCTGCTGGTTGGTCCTCATTTGCAAGAGAAAATAAACTGCAACCTGGAGATGTTTGCATCTTTGAGCTTGTCAATGGAAAAAATAAACTCCCAAGCAATTTCACTACAAAATGTGGAGATGGAATGTCAAACCCGGTGTTTCTCAAGCCTCCAGATAGCGCTGAATGGAAAATACACTGGATTAGGCATGATGGTGAGATTTGGTTTGAGAAAGGATGGAAGGAGTTTGCCACATACTATTCTCTGGGTCATGGTCACTTGTTGTTATTTGAATATGAGAGAACTTCTCACTTGGATGTGCACATATTTGACAATAGTGCCGTTGAAATAGACTATCCATCCCTATTTACTCATGACAACCCTCATCAGATTATCAATGATTCTGTTCAAAGTTTGGACAAACTTGTGCAGATCAATGATGATTCTGTTGAAATTTTGCGTGAGCAATGTTGCCAAAAGACAGGAGTCAAATATACAGTCTCATCTGCTCAACCCTGTAAGAGAATGAAAGATAGCATAATTACAACTGTTGGAGGAAGCAGCAACGGGGTAAACTTGCATCAGCATGGTCAAACTAGGAGGACTATTTTTCAAGACAAGGGTAAAGACATTTTTCATGCTGGATTCCCAAATATGGATGAACTAACCTCCAGGGCTTTAGATAGAGCCACTTCTTTCAAATCTGAACATCCCTCTTTCTTGCTTGTTATGAAACCAGCGTTCATCAATGAAAATTACCTGGAAATTCCGCCACAATTTTCAAAACAATATTTGAAGAAAACACATGCAGTTATCCTCCTTGAAGTCATGGATGGGAGAAGTTGGCCTGTTATTTGTTACGCTTCTAGAATTACTACTGGATGGCAGAAATTTGCATTGGAAAATAATTTGAATGTGGATGATGTTTGTGTTTTTGAACTGATCAAGAAGATCCAGAGTGTTGCTTTCAAAGTTTTCATTTTCCGATCTGCAGAAGAACCAAGTGGCCCCATTTCACAGGCTAAACATGAATTCTGTGAAAATGCAAATATAGATGATTCAAAATTCAGCATAGTGCATCATCCTTCAACTAGCTCGAGAGGTGGGAGTTCAAGTCAAAGAACTTCACGGGTTGAAAGTCACCTCAAGTTCAACTTCATAATAGGCGAAGGTCAGAAAGAAGCCAGCAAATTCACATCAGAAAATCCCTTTTTCATGGCCACTCTAAAATTGCATGGAAACACAACCAGATGCCCGCGTGTGCCAAGTATCTTTGTGAGAAATTATGTTATAAACAAGCACATGAAGGTGATGATGCTACGGCTCGGAAATAATTTGTGGCCTGTAACGTTTGTATTTCATCAAAATGATGCTTCAGGCACGCTCTCTGCTGGTTGGCCCTTGTTTTCAAGAGAAAATAATCTGCAAATGGGAGATGTTTGTATCTTTGAGCTGGTCAATAGAGAAGATGTAACACTTGCTGTTCATGTTTTCAGAGGTCACTCTCAGATAATGCATTAG 1665 0.391 MNIVYIYGLMQHVPIKFFKKYIGNVKKQVMTMLQFRKTLWPVKLVLHGRGYSVSFSAGWSSFARENKLQPGDVCIFELVNGKNKLPSNFTTKCGDGMSNPVFLKPPDSAEWKIHWIRHDGEIWFEKGWKEFATYYSLGHGHLLLFEYERTSHLDVHIFDNSAVEIDYPSLFTHDNPHQIINDSVQSLDKLVQINDDSVEILREQCCQKTGVKYTVSSAQPCKRMKDSIITTVGGSSNGVNLHQHGQTRRTIFQDKGKDIFHAGFPNMDELTSRALDRATSFKSEHPSFLLVMKPAFINENYLEIPPQFSKQYLKKTHAVILLEVMDGRSWPVICYASRITTGWQKFALENNLNVDDVCVFELIKKIQSVAFKVFIFRSAEEPSGPISQAKHEFCENANIDDSKFSIVHHPSTSSRGGSSSQRTSRVESHLKFNFIIGEGQKEASKFTSENPFFMATLKLHGNTTRCPRVPSIFVRNYVINKHMKVMMLRLGNNLWPVTFVFHQNDASGTLSAGWPLFSRENNLQMGDVCIFELVNREDVTLAVHVFRGHSQIMH 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01963 554 CDD B3_DNA 451 547 IPR003340 GO:0003677
Spst2g01963 554 CDD B3_DNA 286 377 IPR003340 GO:0003677
Spst2g01963 554 CDD B3_DNA 85 159 IPR003340 GO:0003677
Spst2g01963 554 SUPERFAMILY DNA-binding pseudobarrel domain 82 161 IPR015300 -
Spst2g01963 554 CDD B3_DNA 13 85 IPR003340 GO:0003677
Spst2g01963 554 SUPERFAMILY DNA-binding pseudobarrel domain 446 547 IPR015300 -
Spst2g01963 554 SMART B3_2 288 380 IPR003340 GO:0003677
Spst2g01963 554 SMART B3_2 3 84 IPR003340 GO:0003677
Spst2g01963 554 SMART B3_2 453 549 IPR003340 GO:0003677
Spst2g01963 554 SMART B3_2 85 161 IPR003340 GO:0003677
Spst2g01963 554 ProSiteProfiles B3 DNA-binding domain profile. 101 161 IPR003340 GO:0003677
Spst2g01963 554 Pfam B3 DNA binding domain 84 160 IPR003340 GO:0003677
Spst2g01963 554 Pfam B3 DNA binding domain 13 81 IPR003340 GO:0003677
Spst2g01963 554 Pfam B3 DNA binding domain 291 377 IPR003340 GO:0003677
Spst2g01963 554 Pfam B3 DNA binding domain 454 548 IPR003340 GO:0003677
Spst2g01963 554 ProSiteProfiles B3 DNA-binding domain profile. 1 93 IPR003340 GO:0003677
Spst2g01963 554 ProSiteProfiles B3 DNA-binding domain profile. 287 379 IPR003340 GO:0003677
Spst2g01963 554 SUPERFAMILY DNA-binding pseudobarrel domain 281 378 IPR015300 -
Spst2g01963 554 Gene3D - 1 82 IPR015300 -
Spst2g01963 554 Gene3D - 438 550 IPR015300 -
Spst2g01963 554 Gene3D - 267 381 IPR015300 -
Spst2g01963 554 ProSiteProfiles B3 DNA-binding domain profile. 452 549 IPR003340 GO:0003677
Spst2g01963 554 Gene3D - 83 162 IPR015300 -
Spst2g01963 554 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 440 549 IPR044837 -
Spst2g01963 554 SUPERFAMILY DNA-binding pseudobarrel domain 12 82 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01963 Spst-Chr2 18669731 18674689 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01963 5 83 B3 DNA Binding Superfamily AT3G18990 35.802 1.99e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst2g01963 B3 2.5e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01963 - - ccaj:109791753 560.836