Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01919 ATGAGCAAGGTGGAGGATTATACCTTGACCAATCAAGAACTCATCATGCCTTTCTCCAACAATGATAACCTTTTGGATCAACAGCCACACCTCCAAACCGTGCAGACCTTCACTCATTCTGAGGCTTACCATAATCCTATCACACAGATTCCATCACCCTCTGTCTACAATACCAAATATGATCCTTCTCCTCCTTCATCATCTGGCTGCGCTCAAAAGAGTAAGAATCTGGTTGGAAGCAAAAGGAAGAGAAACAATGATAGGCTTAAAGAGAAAGGAGATGAAGTTATCCACGTAAGGGCAAAGAGAGGCCAAGCAACTGATAGCCACAGTTTAGCAGAAAGGGTGAGAAGAGAAAAAATCAATGAGAAGATGAGATATTTGCAGGAGTTGGTTCCAGGGTGCTATAAGTCAATGGGAATGGCAGTAATGTTGGACGTGATAATAGATTATGTTCAATCTCTACAGCACCAAATTGAGTTTCTATCCATGAAGCTTTCGGCAGCTAGTATGTATTCTGATTTCAGCACCACTGAGATAGATGTCACTGAAATCATGCAGAGGAATGTACAAGAGATGAAAGGGAATGCAGGAGAAGGTTATGACGGGATCTGCTACTTCAACCCAATATGGCCACTTTACTGA 645 0.4217 MSKVEDYTLTNQELIMPFSNNDNLLDQQPHLQTVQTFTHSEAYHNPITQIPSPSVYNTKYDPSPPSSSGCAQKSKNLVGSKRKRNNDRLKEKGDEVIHVRAKRGQATDSHSLAERVRREKINEKMRYLQELVPGCYKSMGMAVMLDVIIDYVQSLQHQIEFLSMKLSAASMYSDFSTTEIDVTEIMQRNVQEMKGNAGEGYDGICYFNPIWPLY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01919 214 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 70 180 IPR024097 GO:0006355
Spst2g01919 214 MobiDBLite consensus disorder prediction 45 92 - -
Spst2g01919 214 SMART finulus 111 161 IPR011598 GO:0046983
Spst2g01919 214 Pfam Helix-loop-helix DNA-binding domain 109 156 IPR011598 GO:0046983
Spst2g01919 214 MobiDBLite consensus disorder prediction 45 75 - -
Spst2g01919 214 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 155 IPR011598 GO:0046983
Spst2g01919 214 Gene3D - 101 174 IPR036638 GO:0046983
Spst2g01919 214 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 173 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01919 Spst-Chr2 18297373 18298719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01919 91 187 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 74.227 6.17e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst2g01919 HLH 2.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01919 - - aprc:113869931 318.931