Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01916 ATGTCTTCCACTAAGAACAAGGGAAACGCTCTTGGCGCCAAAACTGCAAGAGCGTGCGATAGCTGCATAAGAAATCGAGCGCGTTGGTACTGTGCCGCGGACGATGCGTTCCTTTGTCAAGCTTGTGACTCTTCCGTTCACTCAGCGAACCTATTGGCGCGTAGACACCACCGCGTTCGCTTGAGGATTGTTTCAAGCAATAACACCAACAAAAACTCATCTTCTGGAATGAGTAATATTCGTGCTCCGTCTTGGCACGAAGGGTTCACCAAGAAACCGCGAACGCCACGTCACGGGAAGCAGCACCCTAACAGGGCTCTGAAGAGCCCCTTCGATGTGGTGGTACCTGAAGTGTTTCCCGAAGACAAGAATTCGAATTCCCATGAACAGAGCTCGGATCAGCTTCTTTATAGAGTGCCCGCAACTCCTTCACATGAGCAAGGGATATCCGTGATTGATGAGAGGAAAGTTGATTTGTTTGGATGTGAAAGCGCGCTTGAGATCGCGCAGTTTGGTGCCGAGGTTGAGAGCTTGTTGGGTGAGGGACTAGAGAGTGAGTGTGTGGGAATGGAAGAGTTGGGGCTGGTGGGTACCAAGGAGGTGGAGGAGTATGCTGCAAAGGAGTGTTGTGTGGATGGTGGGTATGTGAAGGAGGAGACGTTTGAATTGGGATTTGAAGAGGTGAAGGAAAAGGTTATTATTGGGTTGGATGAGAACCAACAAGTACTCGTAGAGAAGGATGAACAAAAGAGGAAGAAGATACTATTGTTGCGGTTGGATTATGAGGCTGTTATCACTGCTTGGACGAACCAAAAATCTCCATGGATTACTGATAAACCAGACTTGGGCACTCAGCATCATTGCATGCATTGTGGCGAATTGGGTGGATTATTTGCGTGCCGTTCAGCAATGGCAGAAGGGGGAAGAGAAGCAAGAGTATCAAGATACAGAGAAAAGCGGCGTACGAGGTTATTCTCGAAGAAGATTAGGTATGAGGTTCGAAGATTGAACGCGGAGAAAAGACCCAGAATGAAAGGGAGGTTTGTAAAGAGGCCTCCTATAGCGACACCACCGACTTTTCCTTCGCTAAGCAAACAATAA 1101 0.4823 MSSTKNKGNALGAKTARACDSCIRNRARWYCAADDAFLCQACDSSVHSANLLARRHHRVRLRIVSSNNTNKNSSSGMSNIRAPSWHEGFTKKPRTPRHGKQHPNRALKSPFDVVVPEVFPEDKNSNSHEQSSDQLLYRVPATPSHEQGISVIDERKVDLFGCESALEIAQFGAEVESLLGEGLESECVGMEELGLVGTKEVEEYAAKECCVDGGYVKEETFELGFEEVKEKVIIGLDENQQVLVEKDEQKRKKILLLRLDYEAVITAWTNQKSPWITDKPDLGTQHHCMHCGELGGLFACRSAMAEGGREARVSRYREKRRTRLFSKKIRYEVRRLNAEKRPRMKGRFVKRPPIATPPTFPSLSKQ 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01916 366 SMART bboxneu5 14 61 IPR000315 GO:0008270
Spst2g01916 366 MobiDBLite consensus disorder prediction 65 107 - -
Spst2g01916 366 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Spst2g01916 366 MobiDBLite consensus disorder prediction 65 81 - -
Spst2g01916 366 Pfam CCT motif 309 351 IPR010402 GO:0005515
Spst2g01916 366 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 4 352 - -
Spst2g01916 366 MobiDBLite consensus disorder prediction 342 366 - -
Spst2g01916 366 ProSiteProfiles CCT domain profile. 309 351 IPR010402 GO:0005515
Spst2g01916 366 CDD Bbox1_BBX-like 18 61 - -
Spst2g01916 366 Pfam B-box zinc finger 16 58 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01916 Spst-Chr2 18262215 18263555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01916 5 351 C2C2-CO-like Transcription Factor Family AT1G25440 41.523 1.25e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Spst2g01916 CCT 1.7e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01916 - - vun:114173052 484.182