Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01915 ATGAAGATGAGTTGTAACGGGTGTCGCATTCTTCGCAAAGGTTGCACTGAGGACTGTGTCATTAGGCCATGCCTCGAGTGGATAAACTCTTCTGAGGCACAAGCCAATGCCACCCTTTTCCTTTCTAAGTTCTATGGTCGTGCAGGCTTGCTCAACCTCATCAATGCTGCCCCACAACACCATCGCCCTGCTGTGTTCAAGTCACTACTGTACGAGGCTTGTGGGAGAATCATGAATCCAACGTTTGGGTCAGTTGGGCTGTTTTGGAGTGGTGAGTGGGCCCAATGCCAAGCTGCTGTTGATGCTGTGTTAGCAGGGTCCCAGATCAAGGTCATGACCCCTTCCCATTCACAAATGGGAGAGACACGTGGCACTCAGAATGCTTCCAAAGTCTTCGACATACGCCACTTGTCAAAGGATGCAGAGATGGAGAAGGTGAGAGGCGAAGCCAAGAAGCAGAAGAGGACGGGGAAGGTGATGAAGTCAATGGCAGATGAGGGTTTGGTCAACTCGGCTACATTATGGAACCCAATTTTGAGGCATGAGCCAAGAGGGTTAGATGGTGGCAGTGAGGAGATTGTGGAGGCTGTGTTGGTTAGCCAACCCAAGCCAACCACCAATGCTGGAGCCAATATTGATTTGGAGCTCACTCTTGGCTAG 660 0.5076 MKMSCNGCRILRKGCTEDCVIRPCLEWINSSEAQANATLFLSKFYGRAGLLNLINAAPQHHRPAVFKSLLYEACGRIMNPTFGSVGLFWSGEWAQCQAAVDAVLAGSQIKVMTPSHSQMGETRGTQNASKVFDIRHLSKDAEMEKVRGEAKKQKRTGKVMKSMADEGLVNSATLWNPILRHEPRGLDGGSEEIVEAVLVSQPKPTTNAGANIDLELTLG 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01915 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 161 - -
Spst2g01915 219 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Spst2g01915 219 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01915 Spst-Chr2 18259340 18260355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01915 1 218 AS2 family AT3G02550 46.983 3.48e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst2g01915 LOB 4.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01915 - - vum:124830139 337.035