Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01909 ATGCTGGAGGTTCTTAATCAATCGGCTAAAACGATGAAGAAGTTGAAGCAAAAGCGAATTCCATTTCACAGTACCAAAATGACAAGGAAACTGCGCATCATTTGTGATGATCCTGATGCTACCGACTCGTCATCGGATGAAGATGAGCACTATGGAAATGGTTGGAAGGTGAAGAGAACTGTGGTTGAGATTTCTCTTCCACCTGTTCCAGTTAACTCTGTCGTTGCAGCTGAAACTAGTACTGAGAGTTCAAACAATGAGGAACTGAACAAGAAGAGGGTTTTGACCAAAAGTCACTCGGTGAAGAGACAATCTTGTGGGAAATACAAAGGTGTTCGTATGAGGAAATGGGGCAAATGGGCTGCAGAGATTCGCGATCCTTTCAAGGGTGCCCGTGTCTGGTTGGGCACTTACAACACTGCAGAAGAGGCTTCTCTTGCCTATGAGACCAAAAGGCTTGAGTTTGAAGCCACGGCCAAGGCTCTCTCTAATGAGAGGAGCAACAACAACATCATCACCAACAACATGATGGACAGCAACAACTATGTTGTTGCATCTGTTGTAACTGTGGCTGCCCCTGAAAAGAACAACTACTGTGTTTCTTCTAATGAAGGTTCTGTATCAGACTCCAAGTCTGCTACTAATGACTACTCAGATAGTAGTATCCTGTCACATACATCACCATATTCTGTGCTTGAGTTGGATACCTCTGCTTCCAATTTGACTGGGAGTGGTAAGGTTTCAGGCAATGAAATTGTTGATACTAAAGATTTGGAGGCCGAAGGTTTGGCCTCTGAGTTTGCTGAGCTGGAAATCCCAGACTTGAGTATGCTGACTGTGCCACCTCCATCTGCAGCCAATGCTACTTCTTCCTCTCAGTTTGATTTTGATTGGTTGCCATTGGACAATCTAGAGCATGGATTTGATGAGGAGCTTGGCTTTGATGATGATCTTGCTGCCTTGGAGGACATGCAGATTTATGGCTTTGATGACAGTCAGCCTAGTGAGCTTCCTGATTTTGATTTTGATGACTTTGGTGCTGATGAGTTTGCTGATGAGAAGGTAAGAGAACATAAATGGAGAAAGTGGGGACAAAGCATGGGTGTTGTGAAGCACAGGCAAGAAAAGACGCTGTATCCCGATAAGAGACTTGTTTGGCAGCTGCGCTAG 1170 0.4462 MLEVLNQSAKTMKKLKQKRIPFHSTKMTRKLRIICDDPDATDSSSDEDEHYGNGWKVKRTVVEISLPPVPVNSVVAAETSTESSNNEELNKKRVLTKSHSVKRQSCGKYKGVRMRKWGKWAAEIRDPFKGARVWLGTYNTAEEASLAYETKRLEFEATAKALSNERSNNNIITNNMMDSNNYVVASVVTVAAPEKNNYCVSSNEGSVSDSKSATNDYSDSSILSHTSPYSVLELDTSASNLTGSGKVSGNEIVDTKDLEAEGLASEFAELEIPDLSMLTVPPPSAANATSSSQFDFDWLPLDNLEHGFDEELGFDDDLAALEDMQIYGFDDSQPSELPDFDFDDFGADEFADEKVREHKWRKWGQSMGVVKHRQEKTLYPDKRLVWQLR 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01909 389 Gene3D AP2/ERF domain 107 164 IPR036955 GO:0003700|GO:0006355
Spst2g01909 389 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Spst2g01909 389 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Spst2g01909 389 Pfam AP2 domain 108 156 IPR001471 GO:0003700|GO:0006355
Spst2g01909 389 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Spst2g01909 389 SUPERFAMILY DNA-binding domain 108 155 IPR016177 GO:0003677
Spst2g01909 389 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 256 - -
Spst2g01909 389 CDD AP2 108 148 IPR001471 GO:0003700|GO:0006355
Spst2g01909 389 SMART rav1_2 108 170 IPR001471 GO:0003700|GO:0006355
Spst2g01909 389 PIRSF PTI6 3 248 IPR017392 GO:0003700
Spst2g01909 389 PIRSF PTI6 281 353 IPR017392 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01909 Spst-Chr2 18225948 18228662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01909 23 352 AP2-EREBP Transcription Factor Family AT1G68550 34.770 5.15e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst2g01909 AP2 6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01909 - - var:108335041 514.612