Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01865 ATGCATACTCACCCTTTCTCATACATATCCTCTTGTCCTGGCAGCAGTGCCTTCTTGGAACCTCATCATCATCATCATCATCAAGAGGATGTGGATGAAGACTCCATCTCTCTCTCTCTTGGTCCTCCTGGCCAACAACACAACCCCAAAGGTACTTCCTCCTCCTCCTCTAACCACCCTTCCACTCTGCACCATTACCAGCATAACCCTACCTCTGATGACCAGAGAGGTGTCACTGTGGCCCTTCACATTGGTCTTCCCAATACCGCTTCAACAATCAGTCCCACCCCCACTAGCAAGCCTGATCTTCATTTGACCTCGGCTCCCATTCAGGGCCAGTACTGGATCCCTTCTCCTGCTCAAATCCTCATTGGACCCACCCAGTTCTCTTGCACTGTCTGCAACAAAATGTTCAACCGTTTCAACAACATGCAGATGCACATGTGGGGACACGGTTCACAATATAGGAAAGGACCTGAATCACTAAGAGGGGCAAAACCAGCTTCTTCAATGCTGAGGCTTCCTTGTTATTGTTGTGCTGAAGGTTGCAAGAACAACATAGACCATCCAAGGTCAAGGCCACTGAAGGATTTTAGGACTCTTCAGACTCACTACAAGAGGAAGCATGGAGCAAAGCCTTTTGGGTGCAGAAAATGTGGCAAGCCTTTTGCTGTGAGAGGGGATTGGAGGACACACGAGAAAAACTGTGGTAAGCTTTGGTTTTGCATATGTGGCTCTGATTTCAAGCACAAGAGGTCTCTGAAAGACCATGTTCGTGCCTTTGGTGATGGCCACGCTCCACACACGGTGGAGAGTTGCGATCAGATTGGGGAGGATGACTTGTTAGGTGATGAAGATGATGAGGAATTAGAATTAGAAGATGATGATGAAGATTATAACAGTAATGAAGTGGTTTTTGACACCGAACCTTTGTCTGTTGTCTCTGAGAGAGAAGGGTGCGAGAAGATGGAGACAAACAGTGAAATGAAAGCTAAGGTTCTTGCATTTAATGCCAGAAGTGGCAGTCTTATCTAA 1035 0.4696 MHTHPFSYISSCPGSSAFLEPHHHHHHQEDVDEDSISLSLGPPGQQHNPKGTSSSSSNHPSTLHHYQHNPTSDDQRGVTVALHIGLPNTASTISPTPTSKPDLHLTSAPIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQIGEDDLLGDEDDEELELEDDDEDYNSNEVVFDTEPLSVVSEREGCEKMETNSEMKAKVLAFNARSGSLI 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01865 344 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Spst2g01865 344 PANTHER ZINC FINGER PROTEIN WIP2 22 288 IPR043584 GO:0003700|GO:0010468
Spst2g01865 344 FunFam Zinc finger protein WIP2 183 265 - -
Spst2g01865 344 MobiDBLite consensus disorder prediction 39 74 - -
Spst2g01865 344 MobiDBLite consensus disorder prediction 19 34 - -
Spst2g01865 344 Gene3D Classic Zinc Finger 169 261 - -
Spst2g01865 344 SUPERFAMILY beta-beta-alpha zinc fingers 197 234 IPR036236 -
Spst2g01865 344 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
Spst2g01865 344 SUPERFAMILY beta-beta-alpha zinc fingers 114 150 IPR036236 -
Spst2g01865 344 MobiDBLite consensus disorder prediction 19 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01865 Spst-Chr2 17758519 17760827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01865 32 270 C2H2 Transcription Factor Family AT1G13290 72.917 2.08e-123 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst2g01865 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01865 - - aprc:113870355 553.132