Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01862 ATGGATGCAATTAGCTGCATGGATGAGAGTACCACCACTGAATCACTCTCCATAAGCCTTTCTCCCACCATGTCATCGGACAAGGTGCTTTTACCTTCTCCGATAGTGTCTTCAAAGAAGCCTTCTCCTCCGCCGCCGTCAAACACCTTGTGTCGTGTCGGCAGCGGAGCCAGCGCAATCGTCGATCCTGAAGGCGGAGGGAACACCGAGGCCGAGTCTCGGAAGCTTCCGTCCTCCAAGTACAAAGGCGTCGTGCCGCAACCCAACGGACGCTGGGGCGCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGAACCTTCAACGAGGAAGACGAGGCGGCGAGGGCCTACGACATCGCCGCGCAGCGGTTCCGGGGCAAGGATGCCGTCACGAACTTCAAGCCCGTTTCCGGCGCCGCCGGAGACGCCGACGACGACGGCGAGGCCGACTTTCTCAGCTCGCATTCCAAGTCGGAGATCGTCGACATGCTGAGGAAGCACACGTACAATGACGAGCTGGAACAGAGCAAGCGCAGCCGCGGAGTCGTCCGGCGGCGCGGCGGAGCCGCCTCCGCCGGAACAGTGAACTCGACCTCCGGCGCGTGTGTTACGAAGGCGCGTGAGCAGCTGTTCGAGAAGGCCGTTACGCCGAGCGACGTGGGGAAGTTGAACCGGTTGGTGATCCCGAAGCAGCATGCGGAGAAGCACTTTCCGTTACAGAGCGTCAACGGCGTTAGCGCTACGGCGGCGAAGGGCGTTTTGTTGAACTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTCCGTTACTCGTATTGGAATAGCAGCCAGAGTTACGTCTTGACCAAAGGTTGGAGCCGTTTCGTTAAAGAAAAGAATCTGAAAGCCGGTGACACGGTTTGTTTTCACCGGTCCACTGGACCGGACAAGCAGCTTTATATCGATTGGAAGGCGCGGAATAATAATGTTAACGAGGCTGGGTTGTTCAGCCCGGTCGGACCGGTTGTTGAACCGATTCAGATGGTTCGGCTCTTCGGCGTTAACATTTTGAAACTACCCGGTTCGGAGCCAAATAATAATAATGCAAGCGCAACTATTCCCGGGTTCTACAATGGCAAAAGAAGAGAAATGGAACTGTTTTCCTTAGAGTGTAGCAAGAAACCCAAGATTATCGGCGCTTTGTAA 1185 0.562 MDAISCMDESTTTESLSISLSPTMSSDKVLLPSPIVSSKKPSPPPPSNTLCRVGSGASAIVDPEGGGNTEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPVSGAAGDADDDGEADFLSSHSKSEIVDMLRKHTYNDELEQSKRSRGVVRRRGGAASAGTVNSTSGACVTKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSVNGVSATAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLYIDWKARNNNVNEAGLFSPVGPVVEPIQMVRLFGVNILKLPGSEPNNNNASATIPGFYNGKRREMELFSLECSKKPKIIGAL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01862 394 SMART B3_2 212 320 IPR003340 GO:0003677
Spst2g01862 394 MobiDBLite consensus disorder prediction 1 84 - -
Spst2g01862 394 MobiDBLite consensus disorder prediction 1 32 - -
Spst2g01862 394 Pfam AP2 domain 79 127 IPR001471 GO:0003700|GO:0006355
Spst2g01862 394 SUPERFAMILY DNA-binding domain 79 135 IPR016177 GO:0003677
Spst2g01862 394 Gene3D - 200 329 IPR015300 -
Spst2g01862 394 ProSiteProfiles AP2/ERF domain profile. 80 135 IPR001471 GO:0003700|GO:0006355
Spst2g01862 394 MobiDBLite consensus disorder prediction 176 197 - -
Spst2g01862 394 SUPERFAMILY DNA-binding pseudobarrel domain 210 315 IPR015300 -
Spst2g01862 394 ProSiteProfiles B3 DNA-binding domain profile. 212 320 IPR003340 GO:0003677
Spst2g01862 394 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 75 363 IPR044800 GO:0003700
Spst2g01862 394 Gene3D AP2/ERF domain 79 136 IPR036955 GO:0003700|GO:0006355
Spst2g01862 394 Pfam B3 DNA binding domain 212 317 IPR003340 GO:0003677
Spst2g01862 394 CDD B3_DNA 211 305 IPR003340 GO:0003677
Spst2g01862 394 FunFam AP2 domain-containing protein RAP2.8 79 136 - -
Spst2g01862 394 CDD AP2 79 137 IPR001471 GO:0003700|GO:0006355
Spst2g01862 394 SMART rav1_2 80 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01862 Spst-Chr2 17734922 17736106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01862 5 394 B3 DNA Binding Superfamily AT1G25560 59.446 3.11e-146 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Spst2g01862 B3 3.1e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01862 K09287 - gmx:100801107 617.076