Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01856 ATGGCTGGAACATCATGGTTGGTGGACAAAAGTAGAATTGCGACCAAAATAAAATGTGCATCAGGAACGTGTGATCCTGGAAAGGTTATATGGAAAAGCAATCCTACCAAGCCTTGCCCAAATTGTCATCATGATATTGACAACAGTGATGTAGCACAAGAGTGGCCCGGCTTACCGAAAGGTGTCAAATTTGATCCATCTGATCAAGAGATAATGTGGCACTTGCTTGCAAAAGTTGGGATAGGAGATTCGAAACCTCATCCTTTCATTGATGAATTTATTACTACTCTTGAAGTGGAGGATGGAATTTGCTATACTCATCCTCAAAATTTACCTGGTGTTAAGCAAGATGGAAGTGCTTCCCACTTCTTCCATAGAGCAATCAAGGCTTACAACACCGGTTCCCGAAAGCGCCGAAAAATACTAGGTCAAGATTTTGGTGATGTCCGCTGGCACAAGACTGGAAGAACTAAACCAGTTGTCTTGAATGGGGCTCAAAAAGGCTGTAAAAAGATTATGGTTCTGTATGTGAGCAATGTAAGAGGAGGAAAAGCTGAAAAGACTAATTGGGTTATGCATCAGTATCACCTAGGAATAGAAGAGGATGAAAAGGATGGGGAGTACATTATCTCGAAAGTGTTTTACCAGCAGCAGCAAGTCAAATTGGGTGATAAAGATGACCAAGATGTTCCTGAAGCCACTGAAATCACTGAATCAACAATTGTGAAGGTGGATCCAGTCACTCCCAAATTGGTGACTCCTGAGCCTCCTTGCCACGAAAGGCAGTGTGCAGATCTAGACCTAGGACAAGAAACACATAACATTCCACAGCTACCTCAGATGGATTGTTTACATGAAATTCAAGCTGATTGCCAAGAACTTCCAACTGAACCATCCATGGTAGAATCTCAAAATGATGAAGGGATAGATAATAAAGAAAGTAATGCTGAGGAAGGTCAAAAATGGTGGGACAGTGAGTCACAGAATCTGTTGGATTCACAACAACTGGTTGAAGCCCTGTCTCTGTGTGACGATCTCGTCCAAAGCCAGTCTCCAAGTAGAGATGGAAAAGAGGAAGGTCATAGGAACCAACCTGGTCTTTCTATTTATGCTCAGCTAGGACCAGAATATCTGAAGAAGGATATTGAAGAGTGTCAAAATCTTGTCCTTGATCCTGCAAATATAGAGAATGATATCTCTCCAGAGTTTCGATTAAGTCAGCTGGAATTTGGTTCACAGGACAGCTTTATTTCCTGGGGATACAGCAACAAGGCAGAGAACTAA 1284 0.4206 MAGTSWLVDKSRIATKIKCASGTCDPGKVIWKSNPTKPCPNCHHDIDNSDVAQEWPGLPKGVKFDPSDQEIMWHLLAKVGIGDSKPHPFIDEFITTLEVEDGICYTHPQNLPGVKQDGSASHFFHRAIKAYNTGSRKRRKILGQDFGDVRWHKTGRTKPVVLNGAQKGCKKIMVLYVSNVRGGKAEKTNWVMHQYHLGIEEDEKDGEYIISKVFYQQQQVKLGDKDDQDVPEATEITESTIVKVDPVTPKLVTPEPPCHERQCADLDLGQETHNIPQLPQMDCLHEIQADCQELPTEPSMVESQNDEGIDNKESNAEEGQKWWDSESQNLLDSQQLVEALSLCDDLVQSQSPSRDGKEEGHRNQPGLSIYAQLGPEYLKKDIEECQNLVLDPANIENDISPEFRLSQLEFGSQDSFISWGYSNKAEN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01856 427 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 4 386 IPR044799 GO:0003700
Spst2g01856 427 Gene3D NAC domain 67 221 IPR036093 GO:0003677|GO:0006355
Spst2g01856 427 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Spst2g01856 427 FunFam NAC domain-containing protein 8 67 220 - -
Spst2g01856 427 MobiDBLite consensus disorder prediction 298 322 - -
Spst2g01856 427 MobiDBLite consensus disorder prediction 306 320 - -
Spst2g01856 427 MobiDBLite consensus disorder prediction 348 368 - -
Spst2g01856 427 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Spst2g01856 427 SUPERFAMILY NAC domain 44 216 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01856 Spst-Chr2 17646001 17650576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01856 23 223 NAC Transcription Factor Family AT1G28470 55.556 3.94e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst2g01856 NAM 1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01856 - - gmx:100799488 797.349