LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst2g01855	ATGGCAGTTTTTGTAACAACCCAAGTTGTGTTATGTGACAACACGCCGATGACTTCTGATAAGACACAGTTAGGATCATGGTTTAATATTCATGTAAGGCCTTTAAGTCAAAGAAAGGGTTCCTTGGACCCCGCATTGGTGACTGCTGAAGAAGGTGCCAAGGTTGTGAAGGTAAGGAAAGATGGGCATGGGCAATTCAAGACCATCATCGATGCCCTTAAAAGCATTCCCAGTGGGAACACCAAGCGTGTAATTTTGCACATTGGACCTGGAAATTACAACGAGAAAATCACAGTTGAGAAGACTAAACCTTTCGTCACCTTCTATGGGACACCTGGTCAAATGCCAAAGATTTCCTATGGAGGCACGGCAAAACAATATGGCACTGTTGATAGTGCCACATTAATCGTCCTCTCAGATTACTTTGTGGCAGCCAACGTAATGATCCTGAACTCTGCACCAAGACCAGATCTAAACACTGTAGGAGGTCAAGCAGCTGCACTACGAATTTCTGGAGACAAAGCAACATTTTATAATGTCCATCTATATGGGTACCAAGACACAGTGTGCGATGATGCACATAGACATTTCTTCAAAGACTGCTACATTCAAGGAACCGTTGATTATATTTTTGGAAGTGGGAAGTCACTGTATGTGAATTGTGAACTAAGAACGCTTGGCGACGCTATGGATACTTACATAACAGCACAAGCAAGAAAAAACAAGCAAGAGGACAATGGATACTCCTTCGTACATTGTGAACTTACTGGAACCGGAACTGGTGCTTACTTGGGAAGAGCGTGGTTTTCTCATTCCACAGTGGTGTTTGCTTACTGTAACATGGGTAACATTTTCAACAAGGTAGCCTGGAGTAACAACAATCACAAGGAATATGACAAGTAA	903	0.4264	MAVFVTTQVVLCDNTPMTSDKTQLGSWFNIHVRPLSQRKGSLDPALVTAEEGAKVVKVRKDGHGQFKTIIDALKSIPSGNTKRVILHIGPGNYNEKITVEKTKPFVTFYGTPGQMPKISYGGTAKQYGTVDSATLIVLSDYFVAANVMILNSAPRPDLNTVGGQAAALRISGDKATFYNVHLYGYQDTVCDDAHRHFFKDCYIQGTVDYIFGSGKSLYVNCELRTLGDAMDTYITAQARKNKQEDNGYSFVHCELTGTGTGAYLGRAWFSHSTVVFAYCNMGNIFNKVAWSNNNHKEYDK	300

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst2g01855	300	PANTHER	ACYL-COA THIOESTER HYDROLASE YBHC-RELATED	49	297	-	-
	Spst2g01855	300	Gene3D	-	7	300	IPR012334	-
	Spst2g01855	300	Pfam	Pectinesterase	56	294	IPR000070	GO:0030599\|GO:0042545
	Spst2g01855	300	ProSitePatterns	Pectinesterase signature 2.	203	212	IPR033131	-
	Spst2g01855	300	SUPERFAMILY	Pectin lyase-like	53	295	IPR011050	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst2g01855	Spst-Chr2	17642748	17643870	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst2g01855	1	300	Carbohydrate Esterase	AT1G69940	53.667	2.00e-120	348

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst2g01855	K01051		-	gmx:100813174	451.44