Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01816 ATGACATTTGAGGCTTCCGAGATGACATTTGAGGCTTCCGAGATAACAAATTCTACAGACTCTAGTCTCGCTTTGATGACAAAAACAGAATTCTTCAAACCCTCATCAGCTCCTCTTGTACAAAGTGGCTCTGGCAGTGATGTTGTGTACACACCATCTGATCCTGGTGGACTAGGCCACTCAAGGTCATGGTTTTCATATGAAGAACTAATCAAGGCTACAAATGGTTTCTCAAGTCAAAGTCTTTTGGGTGAGGGTGGATTTGGTTGTGTGTATAAAGGACTTCTTCCAGATGGAAGAGAGATAGCAGTCAAACAACTGAAGATTGGTGGAGGTCAGGGCGAGAGAGAATTCAAAGCTGAGGTGGAAATTATCAGTCGTATACATCATCGCCATTTGGTTTCTTTAGTGGGATACTGCATTGAAGATAACAGAAGATTACTTGTCTATGACTATGTTCCTAACAATACCCTTTATTTTCATCTACATGGGGAAGGCCAGCCTGTGCTAGAATGGGCAAACCGTGTTAAAATTGCAGCTGGTGCAGCCCGAGGACTAGCTTATCTCCATGAAGACTGCAACCCTCGGATCATTCACAGGGATATCAAGTCGTCAAACATTCTTTTAGATTTCAATTGTGAAGCAAAGGTCTCAGATTTTGGGCTAGCCAAATTAGCTCTGGATGCAAATACGCATATTACCACACGAGTCATGGGAACTTTTGGGTATGTTGCCCCCGAATATGCTTCAAGTGGCAAATTGACTGAGAAGTCTGATGTATATTCTTTTGGAGTCGTGCTTTTGGAGCTAATTACTGGGCGAAAACCAGTGGATGTATCCCAACCCTTGGGAGATGAAAGCTTGGTTGAATGGGCTCGGCCTTTACTGAGTCATGCAATCGATAGTGAGGAATTGACTAGTTTGGCAGATCCAAGGCTAGAAAAGAATTATGTTGAGAGTGAATTGTATTGCATGATTGAGGTTGCTGCTGCTTGTGTGCGGCATTCAGCTTCAAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAGGAGGTACTGATCTAACCAATGGAATGAGACTTGGGGAAAGCGAAGTGTTTGACTCTGCACAGCAATCTGAAGAAATAAGATTATTTCGTGCATTGTTGTTGCTTTTGATTGTGGAATTGACTTCATCGGGTTCACATCCTCATTCTGGTGCCTGA 1215 0.4313 MTFEASEMTFEASEITNSTDSSLALMTKTEFFKPSSAPLVQSGSGSDVVYTPSDPGGLGHSRSWFSYEELIKATNGFSSQSLLGEGGFGCVYKGLLPDGREIAVKQLKIGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIEDNRRLLVYDYVPNNTLYFHLHGEGQPVLEWANRVKIAAGAARGLAYLHEDCNPRIIHRDIKSSNILLDFNCEAKVSDFGLAKLALDANTHITTRVMGTFGYVAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDVSQPLGDESLVEWARPLLSHAIDSEELTSLADPRLEKNYVESELYCMIEVAAACVRHSASKRPRMGQVVRAFDSLGGTDLTNGMRLGESEVFDSAQQSEEIRLFRALLLLLIVELTSSGSHPHSGA 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01816 404 CDD STKc_IRAK 83 353 - -
Spst2g01816 404 FunFam Proline-rich receptor-like protein kinase PERK8 50 152 - -
Spst2g01816 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Spst2g01816 404 FunFam proline-rich receptor-like protein kinase PERK8 153 364 - -
Spst2g01816 404 Pfam Protein tyrosine and serine/threonine kinase 80 349 IPR001245 GO:0004672|GO:0006468
Spst2g01816 404 ProSiteProfiles Protein kinase domain profile. 77 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g01816 404 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 43 383 IPR047117 -
Spst2g01816 404 ProSitePatterns Protein kinases ATP-binding region signature. 83 105 IPR017441 GO:0005524
Spst2g01816 404 SMART serkin_6 77 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g01816 404 SUPERFAMILY Protein kinase-like (PK-like) 58 348 IPR011009 -
Spst2g01816 404 Gene3D Phosphorylase Kinase; domain 1 57 152 - -
Spst2g01816 404 Gene3D Transferase(Phosphotransferase) domain 1 153 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01816 Spst-Chr2 17210377 17218665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01816 35 385 Trihelix Transcription Factor Family AT5G38560 71.186 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Spst2g01816 PK_Tyr_Ser-Thr 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01816 - - vun:114173712 674.855