Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01813 ATGAACGATGGCGGCAAAGTCCTTCAGACCCCACTTACTTTCTTCTCCCTTGTCTCCTCCCATTCTCGATTCCCTCTCTCTAAACAGGTGGAGGGCCCTGAAGAAAGTTCGTTGAATGGAGAAAGATCACAACTATTCGGTACAGACATATATCTCTCTCTCTTCCGTGGCTCTTTTATGTTTTTGGCTCCATTAAAGCTTTTCATGTCAGATCTTTTCACCCTCTCTTATCATCACCAAATGTTGTTTTGCTCCAATTTTGTTGAATCTTCATCACTGCAGGCGCCAATATCCATGCCTCCAAGCTTCAACACACTTGACTACTCTCTAGATCACCACCAACACCATCTTTATCCACCAAATCAGCATCAACAGCACCTCATGATGAAGTTCCAAGCTTCTGGTGATGAAAACAACAGTGGATCAATGGTGGATTACATGCCTCAAACACCACCACCTCCACCCCATGGTTTTTATGGCGGTTCTAGCAATGGCACGACATCCTATGATAAATTGAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCTAAGTTGGCTTTGAATCAAACAAAAAGCTGTGAAGAATCTGGGATAGATCCAGTTTACTTTCTCAAGTTTCCCGTGTTAAACGACAAGATGGAGGAGGAGCAAAATCTGATGGTGAATGATGACCCTGATGGTGAAGCAGAAAACCATAATGAGAGGTTCAACTTGTCGGATTTGGAGGACAAGTCAAGGGTTGGTGAAGAGGGAATGATGATGAGAGAAGATGAAGAGACTCGAATTTCTGATGACAACAATTCCGTGCAGATGCGGCTTCTTGGTCAGGACGAGACTCAGAAGAATGCAGCAGTGCAGGAAAACAAGAACAAGAGAAAGAGACCAAGAACTGTTAAGACAAGTGAAGAGGTTGAGAGCCAGCGCATGACTCACATAGCAGTTGAGAGGAATCGTAGGAAGCAAATGAATGAGCATCTTCGCGTGCTTAGATCCCTCATGCCTGGTTCATACGTCCAAAGGGGTGATCAAGCTTCTATAATTGGGGGAGCTATAGAGTTTGTGAGGGAACTGGAGCAACTTCTTCAGTGTTTGGAGTCACAAAAGAGGAGGAGGCTACTTGGAGAAGCTCAAGCAAGACAAGTTGGGGATTCCTCCCTTGCACAACAACAACCTCCTTTCTTTCCAGCTCTGCCAATTCCAAATGAGCAGATAAAGCTTGTGGAGTTGGAGACTGGACTTCGTGAAGAAACCGCGGAGAGCAAGTCTTGTTTGGCTGATGTTGAAGTGAAGCTTCTAGGATTTGACGCCATGATCAAAATCCTATCAAGGAGGAGGCCAGGACAGTTGATCAAAACCATTGCTGCACTTGAAGATCTGCAACTAATCATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCGTTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCACCGCAGAAGATATAGCCAGTTCGGTTCAGCAGATATTCAATTTTATCCATGCAAACACTAGCATGTGA 1542 0.4436 MNDGGKVLQTPLTFFSLVSSHSRFPLSKQVEGPEESSLNGERSQLFGTDIYLSLFRGSFMFLAPLKLFMSDLFTLSYHHQMLFCSNFVESSSLQAPISMPPSFNTLDYSLDHHQHHLYPPNQHQQHLMMKFQASGDENNSGSMVDYMPQTPPPPPHGFYGGSSNGTTSYDKLSFADVMQFADFGPKLALNQTKSCEESGIDPVYFLKFPVLNDKMEEEQNLMVNDDPDGEAENHNERFNLSDLEDKSRVGEEGMMMREDEETRISDDNNSVQMRLLGQDETQKNAAVQENKNKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQARQVGDSSLAQQQPPFFPALPIPNEQIKLVELETGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFNFIHANTSM 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01813 513 CDD bHLH_AtFAMA_like 311 378 - -
Spst2g01813 513 SMART finulus 314 365 IPR011598 GO:0046983
Spst2g01813 513 PANTHER TRANSCRIPTION FACTOR FAMA 218 504 IPR044283 GO:0003700|GO:0010052
Spst2g01813 513 MobiDBLite consensus disorder prediction 286 310 - -
Spst2g01813 513 MobiDBLite consensus disorder prediction 224 247 - -
Spst2g01813 513 FunFam Basic helix-loop-helix transcription factor 299 374 - -
Spst2g01813 513 Gene3D - 306 382 IPR036638 GO:0046983
Spst2g01813 513 Pfam Helix-loop-helix DNA-binding domain 309 360 IPR011598 GO:0046983
Spst2g01813 513 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 359 IPR011598 GO:0046983
Spst2g01813 513 MobiDBLite consensus disorder prediction 279 310 - -
Spst2g01813 513 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 374 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01813 Spst-Chr2 17181191 17183872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01813 133 513 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 59.518 1.56e-149 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst2g01813 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01813 K26213 - gmx:100813515 668.307