Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01775 ATGTCCACCAGAAGATCTCGTTCCAGACAATCCGGTGCTTCCGCTGAGATCACCGATGCGCAAATCACCGATCTCGTTTCCAAGTTGCAACAACTTATCCCTGAGCTTCGCGCCAGGCGCTCCGACAAGGTTTCAGCTGCTAAGGTATTGCAGGAGACATGCAACTACATAAAAAACTTGCACAGAGAGGTTGACGATCTAAGTGATCGATTATCGGAGCTTTTGGCTAACACAGACTCCAACAGTGCTCAAGCAGCCATTATTAGGAGCTTACTTATGGTTTGGTTTGTACTTTCTAGACACCAACGCCAAGGACTACCATCGGATCCATTTTTGTGTGGACCCGTTGGAAGGGTCAAGGTTGAAGCTGACAGTGGTTATAACATGTACCATTTGCATGCAATATGTGGTGGGGAAAGGTTGTTTTACAATGTCTCCCGGCCCCAAAAACAAAAAGCAACTTCTACATTTGAGCTTAGAGATATGGTTGATGTCACGTGCCCAATTGAAAGAAACTGTAACAGCAGTGAAGAAGAAATTCCTATGTATGTTTTACTTGCCTCGCTTTCTTCGTTTCCTGCACTGGTGCGTTCTGTTTCAGAGAAAGAGAATTCATTTCTGATCTATTTGAAGCTGCCGCAGCACAGTGGCAGGCCCTTGAGCAAAAGAGCTCCAAAACCTGTCAGTACCCTTATTATTTTAGGATCAGGTGGTCACACTGCTGAGATGCTTAATCTATTGGCAGTGTTACAGAAGGAAAGGTTTAATCCAAGATTCTACATTGCTGCTGCTACTGATAATATGAGTCTTCAAAAAGCTCAGTTGTTGGAAAGCGCCCTGGCTGCTGAGAATGCATCAAGGGTCACCGATACTGCACAGTTCATGAAGATATATCGGAGTAGGGAAGTTGGTCAATCGTATATAACCTCAGTTTGGACTACATTAATTGCAATGGTTCATGCGCTATGGCTAATGATTAAAATTAGACCTGAAGTGATACTTTGCAATGGACCTGGAACTTGTATTCCCCTCTGTGCAATTGCATTCATATTTAAGGTACTCGGAATCAGATGGTCATCAATTTTCTATGTTGAGAGTATTGCAAGAGTGAGAAGGCTCTCGCTGAGTGGCTTGCTCCTGTACAAGTTGCGAATGGCTGATCAACTTTTTGTTCAGTGGCCACAGCTGCAACGACAATATCCCCTAGCTACCTATGTCGAACCTAGATATCTTGAATTTGGTGACGCCGTTAGACTAAATTGA 1263 0.4386 MSTRRSRSRQSGASAEITDAQITDLVSKLQQLIPELRARRSDKVSAAKVLQETCNYIKNLHREVDDLSDRLSELLANTDSNSAQAAIIRSLLMVWFVLSRHQRQGLPSDPFLCGPVGRVKVEADSGYNMYHLHAICGGERLFYNVSRPQKQKATSTFELRDMVDVTCPIERNCNSSEEEIPMYVLLASLSSFPALVRSVSEKENSFLIYLKLPQHSGRPLSKRAPKPVSTLIILGSGGHTAEMLNLLAVLQKERFNPRFYIAAATDNMSLQKAQLLESALAAENASRVTDTAQFMKIYRSREVGQSYITSVWTTLIAMVHALWLMIKIRPEVILCNGPGTCIPLCAIAFIFKVLGIRWSSIFYVESIARVRRLSLSGLLLYKLRMADQLFVQWPQLQRQYPLATYVEPRYLEFGDAVRLN 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01775 420 FunFam UDP-N-acetylglucosamine transferase subunit ALG14 isogeny 230 409 - -
Spst2g01775 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 81 IPR036638 GO:0046983
Spst2g01775 420 CDD bHLH_AtPRE_like 17 77 - -
Spst2g01775 420 Coils Coil 57 77 - -
Spst2g01775 420 Pfam Oligosaccharide biosynthesis protein Alg14 like 231 406 IPR013969 GO:0006488
Spst2g01775 420 PANTHER GLYCOSYL TRANSFERASE-RELATED 210 406 IPR013969 GO:0006488
Spst2g01775 420 FunFam Transcription factor ILI6 7 89 - -
Spst2g01775 420 Pfam Helix-loop-helix DNA-binding domain 21 60 IPR011598 GO:0046983
Spst2g01775 420 Gene3D Glycogen Phosphorylase B; 231 409 - -
Spst2g01775 420 Gene3D - 20 89 IPR036638 GO:0046983
Spst2g01775 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01775 Spst-Chr2 16780212 16789165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01775 1 93 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 69.149 1.44e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst2g01775 Alg14 5e-63 CL0113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01775 K07441 - gmx:100811229 333.569