Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01768 ATGGAATTGGAGGCTGATCATCAAAATGGGATCCGAAGCAGACCCAATTTCCCCCTGCAGCTGTTAGAGAAAAAGGACGTTGATGACGTCACAGAACAACCTTGTTCCACCACTACGAGGGACAGCGTCGTAACTGCAACTACTGTTACTACTACTTCTGCTACTAATAACAACCTCCACTTGGCGGAGCAGCCCAAAAAGCCTCCTCCAAAGCGGACTTCCACCAAGGACCGCCACACCAAGGTCGATGGCCGAGGCCGTCGGATCCGCATGCCCGCAGCCTGCGCTGCCAGAGTCTTCCAGCTCACGCGTGAACTCGGACACAAGTCTGACGGTGAGACCATCGAGTGGCTCCTTCAGCAGGCGGAGCCGGCGGTCATCGCTGCCACCGGTACCGGCACCATTCCTGCCAACTTCACCTCCCTCAACATCTCCCTCCGCAGTTCCGGCTCCACCATGTCGGCGCCGTCCCACTACTTTCGCGGAAACTACTTCAACCCTAGCACGTTCTCCACCTCAGCTGCCGCCGCTGCGGCAGCGGCGCAGCTAAGAAACCGTACCGAGTGGGACCGGAACATGAGCATGCTGATGGAGGATTCTCGTAGGAGCATGTTGGAGAACACTTCTTCCATCTCCGCAATTTTGAATTTCAACCCTATGGGTAACGTTAATGTAATTCAACAAGCGAAACAAGAGCTTCGAGAAGAATCCGGTGGCGGCGGAAGCGGTCTTGAATCGATGGCTTCGGATTCTGATGGAAGCCTGGGGAGAAAGAGAAGGCCAGAACAAGAACTATCACAAATGGGAAGCTATTTGATACAATCGAGCACAGGGTCGCTTCCGGCGAGCCACGCTTCCAATACGGCCGCGTTTTGGATGGTGGCGGGTCACGGTAACCAATCCATGAGTGGTAGTGGTGGTGGCGGCGGCGCGGCCAATGGTAACGATAATCCCATTTGGGCAATTCCCTCTGTTGGGAACAGTGGGGTATATAGAGGAGCTATGTCTGCCCCAGGTGGCATTCATTTCATGAATTTTGCTTCTCCCATGCCCCTTATGCCCGGCGGTCAGCTAGGTTCAGGCATGGTTGGTGGTGGCGGCGGTGGCGGTAGCGGTGGCGCTCAATTTCTAAGTGAAAGTAACTTAGGCATGCTTGCGGCACTTAATGCCTACAGACAGATTCCGGCGAACGGCGTCTCCGAGTCCCCGGGAAGCGCCGGACAACCTAACACCGGAGATGACGGACGTGACTCAACCAGTCAACATTCCCGAGGGTGA 1278 0.5556 MELEADHQNGIRSRPNFPLQLLEKKDVDDVTEQPCSTTTRDSVVTATTVTTTSATNNNLHLAEQPKKPPPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSTFSTSAAAAAAAAQLRNRTEWDRNMSMLMEDSRRSMLENTSSISAILNFNPMGNVNVIQQAKQELREESGGGGSGLESMASDSDGSLGRKRRPEQELSQMGSYLIQSSTGSLPASHASNTAAFWMVAGHGNQSMSGSGGGGGAANGNDNPIWAIPSVGNSGVYRGAMSAPGGIHFMNFASPMPLMPGGQLGSGMVGGGGGGGSGGAQFLSESNLGMLAALNAYRQIPANGVSESPGSAGQPNTGDDGRDSTSQHSRG 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01768 425 MobiDBLite consensus disorder prediction 396 425 - -
Spst2g01768 425 Pfam TCP family transcription factor 73 211 IPR017887 -
Spst2g01768 425 MobiDBLite consensus disorder prediction 65 86 - -
Spst2g01768 425 MobiDBLite consensus disorder prediction 23 42 - -
Spst2g01768 425 MobiDBLite consensus disorder prediction 51 86 - -
Spst2g01768 425 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 39 385 IPR005333 GO:0003700
Spst2g01768 425 MobiDBLite consensus disorder prediction 232 266 - -
Spst2g01768 425 ProSiteProfiles TCP domain profile. 75 129 IPR017887 -
Spst2g01768 425 MobiDBLite consensus disorder prediction 396 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01768 Spst-Chr2 16625298 16626575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01768 266 424 TCP Transcription Factor Family AT1G69690 33.728 7.32e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Spst2g01768 TCP 1.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01768 - - vum:124821453 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01768 2 16625298 16626575 Spst2g01768 2 16625298 16626575 ECH
Spst2g01768 2 16625298 16626575 Spst3g04688 3 98685234 98686433 PCT