Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01759 ATGGAAGAGAGAAATAATGATGCTGAAAAACTTGATGAAGTTATGCTACCTGGGTTCAGGTTTCATCCAACTGATGAGGAGCTTGTAGGGTTTTACCTCAAGAGGAAGATCCAGCAACGCCCTTTGACTATTGAGCTCATCAAGCAGCTTGATATTTATAAATATGACCCTTGGGATCTTCCAAAGTTGGCTACCACAGGAGAGAAAGAGTGGTATTTCTATTGTCCCAGGGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACAGGGACTGATAGGCCGATCTACTCCTCAGAAGGTTCCAAGTGCATTGGCCTGAAGAAATCTCTAGTGTTTTACAAGGGTAGAGCTGCCAAAGGAGTTAAAACTGATTGGATGATGCATGAGTTCAGGCTCCCTTCTCTCACCGACTCACTATCCTCAAAGTACATAGACAAGACCATTCCTGCTAACGAATCATGGGCTATCTGCAGGATTTTCAAGAAAACCAATTCTACAGCTCAAAGAGCTTTATCTCACTCTTGGGTCTCTTCCCTCCCTGAAAGAAGAACCTCTGATCATATCCTTACCAAAGTTCAAGACAGCACCCAGTTTTGTTCAGACAACATGTCATTGTCAAAGAAAACCACCTTAGCTAGCCAGTACTGTACTAACAATTACAATGATGCACAACCTTTAACCCCTTATAGTAGTAGTACACTTTGTCCCTTAGGTGTTGCCTCATACAAATCCATCATTAACCCATTGCTTTACAAAGCCTTTGATCATTTTCCCATTTCAAATGGAGACCTTAGCACGAGCTTGCTATTCTCATCTCCTTTTGAAACATCAGATAGTAATACTAACGCCAAATCTATAACGGACGTTTCTTCCATGTTATTGAACATGTCATCCTCCGTGCTTGGAGATTTCAATAAAACTTCAGAGGACAATACAAATACCAGTACAAGCTTTGGTGGGGTGCAAGAGCACTGTAGTGGCTACCCAATGCCATTTCTACGTGAGATGCAAACCACGTTTTGTGACCAACAATATGATAATATTAATGCATTGGTAAAGCCTCCAAATGTCAATGTGCCTCGTGTTGATGACCAAGAGCTAGAGTTGGAGTTGGAAACAGTACGATCCATTGGACTTCCATTCAGTGGCATGCCATTCAATATTGGCGATGCATGGAAGTCAAATATGCTTTGGGATACTTCCACTTTTCCTTGTGATGTGCCATCTAGTTATTCCACAACTAAGTGCTATACTTAG 1287 0.4188 MEERNNDAEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLTIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSLSSKYIDKTIPANESWAICRIFKKTNSTAQRALSHSWVSSLPERRTSDHILTKVQDSTQFCSDNMSLSKKTTLASQYCTNNYNDAQPLTPYSSSTLCPLGVASYKSIINPLLYKAFDHFPISNGDLSTSLLFSSPFETSDSNTNAKSITDVSSMLLNMSSSVLGDFNKTSEDNTNTSTSFGGVQEHCSGYPMPFLREMQTTFCDQQYDNINALVKPPNVNVPRVDDQELELELETVRSIGLPFSGMPFNIGDAWKSNMLWDTSTFPCDVPSSYSTTKCYT 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01759 428 FunFam NAC domain-containing protein 35 24 175 - -
Spst2g01759 428 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 254 - -
Spst2g01759 428 Gene3D NAC domain 24 177 IPR036093 GO:0003677|GO:0006355
Spst2g01759 428 SUPERFAMILY NAC domain 14 172 IPR036093 GO:0003677|GO:0006355
Spst2g01759 428 ProSiteProfiles NAC domain profile. 15 172 IPR003441 GO:0003677|GO:0006355
Spst2g01759 428 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01759 Spst-Chr2 16521699 16523278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01759 1 314 NAC Transcription Factor Family AT1G26870 56.563 3.40e-112 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst2g01759 NAM 7.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01759 - - gmx:100783995 717.227