LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst2g01758	ATGACAAGAACAAGGTCGTCGTTGTGTAGTAACGAATGGGCTTACGATGTTTTTCTGAGTTTTCGAGGCGAGGACACGCGGAGGGGTTTTACCGGAAACCTTTACAAGGCGTTGTGCGCGAAAGGAATCAACACGTTCATAGACGATGAGGGGCTGAAGAAAGGGGAGGAGATAACAGGAGGTTTGATGGAAGCGATAGAGAAGTCTAGGATTGCAATTGTGGTGTTTTCAAAGAAGTATGCATCGTCGAGGTTTTGTCTGGAAGAACTTGTGAAGATCATGGAGTGCTTGACAGAGAAGGGGAGGTTGGTTTGGCCAGTTTTCTATGAAGTGGATCCGTGTGATGTGCGGCAGCAGAAAGGAAGCTACGGAGAAGCATTGGCGAAACATGAAAGAAGAATGAGTGGGACGCTGGAGACGGAGAAGGTCAAAAGCTGGAGACTTGCTCTGCAGAAAGCAGCAGATCTATCTGGGATTTATGGAATCGGTGGGATTGGGAAGACAACACTTGCATGTGCAGTATACAATTTAATTGCTGACCAATTTGAGGGTCTTTGTTTTCTTGGTGATATTAGAAAAAATTCTATGAAGCATGGGTTGGTTCAACTTCAGGAGACGCTTCTTTCTGATTTAGTAGGAGAGAAAGACATCAAGTTGGGGAATGTAAATAAGGGAATTCCCATTGTTAAAAGGAGGCTGTTTAAGAAGAAAATTCTGTTGATTTTGGATGATGTTGATGAATTGGAGCAAATAAAAGCACTTGCTGGTGGGCTTGATTGGTTTGGTTATGGCAGCAAAATTATCATAACAACAAGAGATAAGCATTTGCTATGTGTTTGTGGTGTTGAAACAACATATGAAGTTGAAGGATTGAATCATAAAGACGCCTTTGAATTGTTTAGTTGGAATGCTTTCAAAAGAAAACAAGTTAAGCCTACATATCTGGACATTTCAAAGAGAGCAATACTTTATTCTGATGGCCTTCCATTGTCTTTGGAAATAATAGGTTCTGACTTGTATGGCAAAACAAAGTTGCAATGGGAATCAGCATTAGACTCTTACGAAAAAGTTCCTCATAAAAACATCCTTGACATCTTGAGAGTAAGTTATGATAGCTTAAAGGAATTTGAAAAGGAAATTTTTCTAGACATGGCTTGCTTCTTTAAGGACTACTACCTTAGTGATGTGATAAACATATTGTGTAGTGGTCGTGACTCTTCCCCTGAGTATGGAATCCAGGTGTTGATTGATAAATCTCTCATAAAAATTGATCAACATCGTGTGAGAATGCATGATTTGATTGAGGATATGGGTAGAGAAATTGTACGGCTGGAATCACCTTCGAAGCCAGGTCAACGTAGTAGATTATGGTTTGCCAAAGATATTCTTCATGTTTTCAAAGAGAACAAGGGGTCTGATAAAATTGAGATCATCATGCTACATCTGTTCAAAGATAAACAAGTACAATGGGAGGGAAATGCGTTGAAAAAGATGGAAAACCTCAAAATACTGATCATAGAAAGTGGTCGCTTTTCTGTTGGACCAAATTACCTCCCAAAGTGTTTAAGGGTGCTAAAATGGCGTGAATATCCTGAACCATTGTTGCCATCTAATTTTGATCCAAAGAAGCTTGTCATACTTGACTTGCCCATGAGTTCCATCATGTTAGACAATCATGTCATCATGAAATTTAAGTCTTTGACCGAAATGAAGCTAAGTGGTTGCCTATTACTAAAACATGTGCCCAACATGTCTGGTGCACCGAACTTGAAGAAACTACACCTTGATTCCTGCAAGAATTTAGTTTCAATCCATGATTCAGTTGGATTCCTTACCAAACTTAAAAATGTGAATCTTACCCATTGTTGCAGTCTAAGGGATCTTCCTCGTGGCATCAACTTAACTTCTCTTAAAACCATGTCCCTTGGATACTGTCTGAGTCTGAAGAATTTCCCAGAAATTTTAGGGAAGATGGAAAACATAAACTACCTATGTTTGAGTGGTACTGGCATAAGAGAATTGCCTGTTTCAATTGGAAATCTTGTTGGCCTCACAATCCTGTCAGTGGATGATTGCAGAAGGCTGCAAGAATTACCGAGTAATATTTTTATGCTGCCAAAACTAAACACTTTTTTAGCAACCGCTTGTAAGATGCTTGCAAAAATAAAGAGCCAAGGTCAAGAGCAAGAAATTGTATCTTCAAATGTGAGGAATGTCACTCTTTGTTCGGTTGGAAGAGATCGTAATTGGTATTTGATGGATGAATTTGTCGCTACGCTTCTTCCTCGCTTGCACCTTGTGACATGTTTATTCCTTAATCATACCAATATCACAACCCTTCCAGCTTGCATCAATGCATGTCGCTCTTTGACCAAACTTTATTTGGATGAATGCAATGAACTTAGAGAAATTAGAGGCCTACCATCAAATATACAATATCTTTCAGCGGTGAATTGTACATCGTTGACTTCCCAGTCTAAGGAAATGCTACTGAATCAGGCACTGTACAAGACTAGGAGCACATACTTTTGTTTTCCAGGATCAACTATCCGATGTTTGTCCAATCACTGTAGCAAGGGACCATCCTTGTCTTTCTGGTTTCGGAACAAATTTCCTGCAATTACTCTCTATGTTGTTGGAGTTTCAGGTGTTTTTCTTCGCTATGAATTTGACTTGATCATTAATAGCAGCCAACGTTTCCCGAATTTTGTCCATGTTAGGTCCCCGAGTTTGTTTCAGGCAAATCATATAATGTTGTTCGATTTACGTCTTGAAATTGGCACTGGTAAATTTGAAAAGATGTATATTGAGAATGGATGGAACCATGCAGAGATTTTGTTGGTGAGTGGTGGAGGTAGAGCAAATATGAAATGCATGGGAGTTCATGTGAAAGAACAAAAGACAAGCATGGAAGATATTCGATTTACACTCGGGGGTCAATGTTTCAAGCTGCGAAAGATCGTGGACAAAATTGTTGTGGCAATGTGGTTAGGGAAACTTTCCAAACGATGA	3012	0.3958	MTRTRSSLCSNEWAYDVFLSFRGEDTRRGFTGNLYKALCAKGINTFIDDEGLKKGEEITGGLMEAIEKSRIAIVVFSKKYASSRFCLEELVKIMECLTEKGRLVWPVFYEVDPCDVRQQKGSYGEALAKHERRMSGTLETEKVKSWRLALQKAADLSGIYGIGGIGKTTLACAVYNLIADQFEGLCFLGDIRKNSMKHGLVQLQETLLSDLVGEKDIKLGNVNKGIPIVKRRLFKKKILLILDDVDELEQIKALAGGLDWFGYGSKIIITTRDKHLLCVCGVETTYEVEGLNHKDAFELFSWNAFKRKQVKPTYLDISKRAILYSDGLPLSLEIIGSDLYGKTKLQWESALDSYEKVPHKNILDILRVSYDSLKEFEKEIFLDMACFFKDYYLSDVINILCSGRDSSPEYGIQVLIDKSLIKIDQHRVRMHDLIEDMGREIVRLESPSKPGQRSRLWFAKDILHVFKENKGSDKIEIIMLHLFKDKQVQWEGNALKKMENLKILIIESGRFSVGPNYLPKCLRVLKWREYPEPLLPSNFDPKKLVILDLPMSSIMLDNHVIMKFKSLTEMKLSGCLLLKHVPNMSGAPNLKKLHLDSCKNLVSIHDSVGFLTKLKNVNLTHCCSLRDLPRGINLTSLKTMSLGYCLSLKNFPEILGKMENINYLCLSGTGIRELPVSIGNLVGLTILSVDDCRRLQELPSNIFMLPKLNTFLATACKMLAKIKSQGQEQEIVSSNVRNVTLCSVGRDRNWYLMDEFVATLLPRLHLVTCLFLNHTNITTLPACINACRSLTKLYLDECNELREIRGLPSNIQYLSAVNCTSLTSQSKEMLLNQALYKTRSTYFCFPGSTIRCLSNHCSKGPSLSFWFRNKFPAITLYVVGVSGVFLRYEFDLIINSSQRFPNFVHVRSPSLFQANHIMLFDLRLEIGTGKFEKMYIENGWNHAEILLVSGGGRANMKCMGVHVKEQKTSMEDIRFTLGGQCFKLRKIVDKIVVAMWLGKLSKR	1003

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst2g01758	1003	Gene3D	Ribonuclease Inhibitor	486	649	IPR032675	-
	Spst2g01758	1003	SMART	till_3	14	156	IPR000157	GO:0007165
	Spst2g01758	1003	PRINTS	Disease resistance protein signature	232	246	-	-
	Spst2g01758	1003	PRINTS	Disease resistance protein signature	325	339	-	-
	Spst2g01758	1003	PRINTS	Disease resistance protein signature	156	171	-	-
	Spst2g01758	1003	PRINTS	Disease resistance protein signature	632	648	-	-
	Spst2g01758	1003	SUPERFAMILY	L domain-like	477	832	-	-
	Spst2g01758	1003	SUPERFAMILY	Toll/Interleukin receptor TIR domain	5	158	IPR035897	-
	Spst2g01758	1003	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	158	383	IPR027417	-
	Spst2g01758	1003	FunFam	Disease resistance protein (TIR-NBS-LRR class)	11	163	-	-
	Spst2g01758	1003	Gene3D	-	290	374	IPR042197	-
	Spst2g01758	1003	Gene3D	-	9	165	IPR035897	-
	Spst2g01758	1003	Gene3D	Ribonuclease Inhibitor	749	837	IPR032675	-
	Spst2g01758	1003	Gene3D	Ribonuclease Inhibitor	650	743	IPR032675	-
	Spst2g01758	1003	SUPERFAMILY	"Winged helix" DNA-binding domain	361	466	IPR036390	-
	Spst2g01758	1003	Pfam	TIR domain	14	152	IPR000157	GO:0007165
	Spst2g01758	1003	Pfam	NB-ARC domain	156	371	IPR002182	GO:0043531
	Spst2g01758	1003	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	15	727	IPR044974	GO:0006952
	Spst2g01758	1003	ProSiteProfiles	TIR domain profile.	13	150	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst2g01758	Spst-Chr2	16502099	16508464	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst2g01758	542	774	WRKY Transcription Factor Family	AT4G12020	28.629	8.19e-14	74.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst2g01758	-		-	gmx:100814790	971.074