Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01752 ATGTTGAATGTTGACGTGATTGGGAACAAAAAAAGGAAGAGATGTGGGAGGGTTTTCAGGTTCAAGAACTTCGGTGAACCCGGATACCCTGTTATGTTTAGTGGGCCATTTCGTGAGAATGTGAATGCATTGCTGGAATATGCAAATTTGGAGAGTGATTTAAGCATGCCAATGTGGTCTTTTCAACTTGAAGTTCATCACCACCCACCTTTGCATATCTTGTTGTTTGTGATTGAAGAGCCAATCGAGGCAGTGCTGAATCGCCATTGCAAGCATTGTCAATACGTTGGCTGGGGAAACCATTTGATCTGCAACAAGAAGTATCACTTTGTGTTACCCTCAAAGGTGGCACTTGGAAGCTGCAGGAACTGTGAAGGGTGCTGTGATGCAATTGCTTCAATAAATAATGGTAAGTCAAAATTAATTGAATTACAGGGTCATATGATGCATGGTGTTTTTCACTCTAATGGGTTCGGCCATTTGCTATGTGTCAATGGATTGGAAATGGGTTCAAATTTGGCTGGAAACCAGATCATGGACTTTTGGAACCGTTTGTGCAAGGGATTGCAAGCAAGGAAGGTGAGTTTGAATGACATTTCACGAAAGAGAGGGATGGAACTAAGACTTGTGAACGGAATAGCATACAATGAGTCATGGTTCAGTGGTTGGGGTTACAAATTTGGTCGAGGAAGCTTCGGTGTAACTGAATCGATGTACCACAAGGCCATGCAAGCAATCAGAAGCATGCCATTATATTTGATCATACACCACATCACCAATTCCAACCATGGCATTGCACTCATCTTCTCAAGGTACCAAACACTTTCAAATCACTCCCTTATAACCCTTGGTGACCTATTTTGTTATATGTTAGACCTCAAATCACGCCTTCCTCGTGACACTTGCATTGCTTCCTATAGCACAAATGCTTTGGCTGAGACCAATTGTCGTTGGTCCCCTAAAAGGATTGAGATGGCAACCAGGGTCATTGTTGAGGCCTTGAGAAAAACAGAGTTTAGATGGGTTTCAAGGCAGCAAGTTAGAGATGCTGCTCGTGCGTACATTGGAGACACAGGTTTGCTAGATTTTGTGTTGAAGTCATTAGGAAACCATGTCGTAGGAAACTACTTGGTTCGTCGAAGCTTGAACCCTGTCACCAAGGTCTTGGAATATTGCTTGGAAGACATTTCTAATGTTTACCCATGTAATGAAGGCTTGGTTATGAATAACAAGGTGAAGGATAAGCACAAGATCACACGAGTTCAACTAATGAAAGACATGCTTTATTTATACAAGTACTTTCTCACAGACCCAAAACCAATTATGGGATCACAATTTCTCTCAGCTATACCATTAGCGGCTAGGATAATTCTTGACACCAAGTATTTTATAAAAGATTACTTTGGAGATTTTTCTTCCCAAGTTGACCTAGCTTCTCAACATAAACTCAATCTTTATTGCACAATTTTGGTGAGAAATGATGTCAGTCATGACCAGTACCTAAACAAGGCCTTTATGCCACCCTATGAGTGTATCGCGTTGAAAACAAATGCTACCATCCATGAGTTAAAACTAGAGGTTGAACGGAGTTTTAGGGAAATCTATTGGGGGTTAAGGAGTTTTGTGGTGGAATCAATTGGGAATTTGAGTATCAATGACGCAACTGAAATGGTTTTTGGACTAACCAAAGTGGGTGAAAAAATTGTGCTTGAAGGTCGTCACACTGAGATGAGAGTAAACATGATTGAACAAATGTGTGAAGGTGATCCAAATGGTGGTATGGTGGAGTGCCCCTGTGGAACTATAGAAGATGACGGTGAAAGGATGGTGTCGTGTGATATTTGTGAGATTTGGCAACACACTAGGTGTGTTCGAATTCCCAATGATGAAGAGATTCCTCATATTTTTTTATGCAAAAAGTGTGAACAAGAAATTTGA 1938 0.4097 MLNVDVIGNKKRKRCGRVFRFKNFGEPGYPVMFSGPFRENVNALLEYANLESDLSMPMWSFQLEVHHHPPLHILLFVIEEPIEAVLNRHCKHCQYVGWGNHLICNKKYHFVLPSKVALGSCRNCEGCCDAIASINNGKSKLIELQGHMMHGVFHSNGFGHLLCVNGLEMGSNLAGNQIMDFWNRLCKGLQARKVSLNDISRKRGMELRLVNGIAYNESWFSGWGYKFGRGSFGVTESMYHKAMQAIRSMPLYLIIHHITNSNHGIALIFSRYQTLSNHSLITLGDLFCYMLDLKSRLPRDTCIASYSTNALAETNCRWSPKRIEMATRVIVEALRKTEFRWVSRQQVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNVYPCNEGLVMNNKVKDKHKITRVQLMKDMLYLYKYFLTDPKPIMGSQFLSAIPLAARIILDTKYFIKDYFGDFSSQVDLASQHKLNLYCTILVRNDVSHDQYLNKAFMPPYECIALKTNATIHELKLEVERSFREIYWGLRSFVVESIGNLSINDATEMVFGLTKVGEKIVLEGRHTEMRVNMIEQMCEGDPNGGMVECPCGTIEDDGERMVSCDICEIWQHTRCVRIPNDEEIPHIFLCKKCEQEI 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01752 645 ProSitePatterns Zinc finger PHD-type signature. 597 641 IPR019786 -
Spst2g01752 645 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 582 644 IPR013083 -
Spst2g01752 645 SMART PHD_3 596 642 IPR001965 -
Spst2g01752 645 CDD PHD_MMD1_like 596 641 - -
Spst2g01752 645 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 644 - -
Spst2g01752 645 Pfam PHD-finger 597 643 IPR019787 -
Spst2g01752 645 SUPERFAMILY FYVE/PHD zinc finger 585 643 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01752 Spst-Chr2 16441518 16448011 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01752 10 645 PHD Transcription Factor Family AT5G22260 51.818 0.0 658
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst2g01752 PHD 4.8e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01752 K26271 - gmx:100780210 1162.13