Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01744 ATGGCTTCAGGGGCTGAGGTGCCGGATACCTCTGTTTTCGAGAGGTTCGAGCGAAACAGAGACATGGCTCTGTTTTTGCCATTTCTCTTTAGTCTATCGGAGACTGCCCAAGTACGAGATAGCGACGATCCAAATAACGAAAACGGGAACACTGAAGGATCCCAGCGTCAAAGAATCATCTTGGTAAACCCCTTCACTCAGGGCATGGTGGTCATCGACGCTGATTCGCGCCTTGAAGCTCTGTTTCGAGAGCTCAATAGCGGAAAAAGTGGTCGACCTCCGGCTTCAAAGGAATCCATTGAGGCCATGCCGAGTGTGGAGATTGGAGAGGGGTGTGAGGATTTGGAGTGTGTGGTTTGTTTGGAAGAGTTTGGGGTTGGTGGGGTGGCGAAGGAGATGCCATGTAAGCATAAGTTTCATGATGATTGTATTGAGAAGTGGTTGGGAATGCATGGGTCTTGCCCTGTTTGTAGGTATGAGATGCCGGTGGATGAGAATAATTCGGGGAAGAAGAGTGAGGAAGAAGGGGGAGAGAGGAGAAGGGGTGGTGGTAGTGGTGATGAAGTTTGGGTTAGTTTCTCTTACAATAGGATTAGGAGAGACCAGGATCATGATCAAGCTGATTCTTCAAATGATGATTCTTTATCAAGTCATGGAGATGATGGTGCAGAGAGTTAG 678 0.4823 MASGAEVPDTSVFERFERNRDMALFLPFLFSLSETAQVRDSDDPNNENGNTEGSQRQRIILVNPFTQGMVVIDADSRLEALFRELNSGKSGRPPASKESIEAMPSVEIGEGCEDLECVVCLEEFGVGGVAKEMPCKHKFHDDCIEKWLGMHGSCPVCRYEMPVDENNSGKKSEEEGGERRRGGGSGDEVWVSFSYNRIRRDQDHDQADSSNDDSLSSHGDDGAES 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01744 225 SUPERFAMILY RING/U-box 112 164 - -
Spst2g01744 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 164 IPR013083 -
Spst2g01744 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 43 162 - -
Spst2g01744 225 FunFam E3 ubiquitin-protein ligase RNF181 83 164 - -
Spst2g01744 225 MobiDBLite consensus disorder prediction 164 185 - -
Spst2g01744 225 MobiDBLite consensus disorder prediction 201 225 - -
Spst2g01744 225 MobiDBLite consensus disorder prediction 37 56 - -
Spst2g01744 225 ProSiteProfiles Zinc finger RING-type profile. 117 158 IPR001841 -
Spst2g01744 225 SMART ring_2 117 157 IPR001841 -
Spst2g01744 225 MobiDBLite consensus disorder prediction 163 188 - -
Spst2g01744 225 Pfam Ring finger domain 116 158 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01744 Spst-Chr2 16394902 16395579 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01744 10 217 C3H Transcription Factor Family AT1G26800 52.153 5.62e-65 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01744 - - ccaj:109816232 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01744 2 16394902 16395579 Spst2g01744 2 16394902 16395579 ECH