Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01742 ATGGATCTTCAAAACATGCAAAATCAAAGCATGCATTTTGTGTTGTCCACTGATGCCAAACCAAGGCTAAAATGGACTCCTGAGCTTCACCAACGGTTCATTGAGGCGACCAATCAGCTTGGAGGTGCAGATAAAGCAACACCAAAGAGCCTTATGAGGGTGATGGGGATTCCAGGACTTACTCTGTACCACCTGAAGAGCCACTTACAGAAATATAGACTTGGGAAAAGCCAACAACTCGAGACCAGCTCTCACAGCAAACAAGAAGATTACATAGAAACCAAGAGCAGTGACGGCCATTGCAGCAGGGAAATCAGTCTTGGGGCCCAGAATCAAATTACTGAAAACATGCAGATAGCTAAGGCACTCCAAATGCAAATGGAAGTACAAAGGAAACTTTATGAACAAATTGAGGTGCAGAAACATTTGCAGCTCAGAATTGAAGCACAAGGGAAGTATTTGCAATCAGTGTTGAAGAAAGCACAGGAAGCGCTTGCTGGATACAACTCTGCCCCAGTGGGGATAGAACTCACAAAAGCTGAACTTTCTCAGCTAGTTACCATCATCAACAATGCTTGCCCAAGTTCTCCCATCTCAGAACTGACAGAGACAAGAGGGTTGAGTTTAAGCTGTGGGGAGAGGAAAAGAGACAGAGGTACCATGTGTTCACTGGAAAGTTCCTTGACATCTTCTGAAAGCTCTAGTAGAAAGGAAGAGAAACAGCCAATGGAAGAGATAGGGGAGTTCAAAAGCTCCAATAATGCTTCACTTGAATTGCCATTGATGGACATTCACACCGAGAATAAAGCATCCAATGGAGGCTCAAGTAGTGAGACTAGTGGGAGAAAGAGAAGTGCAGCAACACAATCTAATGATGGTAGCTGTGTTGTTGAGCAACCATATGGGAAAAGAAGTGGCAACAAGTTGAGGAAACCCAAGTTGTCAGAAATGCTCGACTTGAACAGCCAATGCCAGAGTGACATGGACTCAACACGTTCAAAAACATTAGACTTAAATTGCAGCTTAAATTTTTGGGAACCATGA 1044 0.4368 MDLQNMQNQSMHFVLSTDAKPRLKWTPELHQRFIEATNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQQLETSSHSKQEDYIETKSSDGHCSREISLGAQNQITENMQIAKALQMQMEVQRKLYEQIEVQKHLQLRIEAQGKYLQSVLKKAQEALAGYNSAPVGIELTKAELSQLVTIINNACPSSPISELTETRGLSLSCGERKRDRGTMCSLESSLTSSESSSRKEEKQPMEEIGEFKSSNNASLELPLMDIHTENKASNGGSSSETSGRKRSAATQSNDGSCVVEQPYGKRSGNKLRKPKLSEMLDLNSQCQSDMDSTRSKTLDLNCSLNFWEP 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01742 347 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
Spst2g01742 347 FunFam Myb family transcription factor 19 77 - -
Spst2g01742 347 Coils Coil 120 140 - -
Spst2g01742 347 MobiDBLite consensus disorder prediction 268 296 - -
Spst2g01742 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 77 IPR017930 -
Spst2g01742 347 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 75 IPR006447 GO:0003677
Spst2g01742 347 MobiDBLite consensus disorder prediction 232 246 - -
Spst2g01742 347 Pfam MYB-CC type transfactor, LHEQLE motif 117 163 IPR025756 -
Spst2g01742 347 MobiDBLite consensus disorder prediction 76 97 - -
Spst2g01742 347 MobiDBLite consensus disorder prediction 220 254 - -
Spst2g01742 347 MobiDBLite consensus disorder prediction 267 315 - -
Spst2g01742 347 Pfam Myb-like DNA-binding domain 22 73 IPR001005 -
Spst2g01742 347 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 275 IPR044848 GO:0003700
Spst2g01742 347 Gene3D - 19 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01742 Spst-Chr2 16384742 16386480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01742 11 305 G2-like Transcription Factor Family AT1G69580 51.299 1.31e-79 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Spst2g01742 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01742 - - gmx:100787178 598.971