Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01741 ATGTCTGAGGGTATTAAAGACCCAGCCATAAAGCTATTTGGTAGAACAATTTCTCTGCCACGCCACGACGAGGTTTCTGCTAATGGTTCTTCTTCTGAACCTGCTCCTCCTCAAGATTGTTCTCACCATCACAGTCCTCCTTCATCTTCATCTTTTCCACGTGAAGTGAGCTCCACAACGGATCATGAACCTGAGAGGGATAAGGAACCATCGAGGAAAGAACTCACCTCAACACAAGTTGACGAAGCATTACATGAGGAACCAAAATCTCCAACATCTTCATGCGATCTCGAGAACCCCAAGACCCCATCAACTGAAATAGAAACTTCCTTACAGAAATCGCCTAAAAAAGGAGACCAAAGTGACACAACAAGCGCATCAGAGGACAAAGCTCCAAAGAAGCCAGACAAGATACTTCCATGTCCACGTTGCAACAGCATGGACACCAAGTTCTGCTACTACAACAACTACAACGTGAACCAGCCACGTCACTTCTGCAAGCACTGCCAGAGATACTGGACTGCAGGAGGAACCATGAGGAATGTGCCTGTTGGTGCAGGTCGCCGCAAGAACAAAAACTCTTCCACTGCTGTATCACATTATCGCCAAATCATGGTTCCTGAGACCCTTCAGAACGGATCATTGCACAGTGCCGTATTGACCTTTGGATCAGATCCCCCTCTCTGTGACTCCATGGCTTCTGTGTTGAGCCTTGCTGAGAAAACGCAAAATGGTGTCCTCAACGGGTTTCATTCACCCAAGCATAATATTAACACTCTTAATAATGATACTGGGGATGATAATAACTCAGTTGGTGCTTCTGTTATGGCTTCAACTTTGTGTGAGAGGAGAGACAATGCTACTAGCTATCATGAAGAATCAGCGGATAAGATTTACCATCAAGGTTTCACTCCTCAATTGTGCCTCCCAGGTTCTTCTTCATCTTCTTCTTCTCCTTGGCCTTATCCATGGAACCCTGCAATGACTCCTGCTTTTTACCAACCTGTCTCTTTCTACCCCACACCAGCATTCTGGGGTTGCATGCCATCACCCTCTTGGAGTGTAAATTACCAGTCTGCCCCTAGTTCTGGTCCAAACTCACCAAGCTTGGGGAAACATTCAAGAGATGGGGATATCTTGTTGCAAAAGCCTGGCACAGAAAGCAGCAGCAACATTGCAGAAAACAGCAACACTGTGTTGATCCCCAAGACACTGAGAATTGATGACCCTACAGAAGCTGCAAAGAGCTCTATATGGTCAACACTAGGGATCAAGAATGAGAAGGGGAACTCTCTCAATGGAGGAGGCCTTTTCAAGGCATTTGCATCAAAGGGAGGTAGTGATGACAAGAAGAACCATGTGGTGGTTGAAGCATCCCCAGTGCTGCAAGCCAACCCTGCAGCTTTGTCAAGGTCTCTTGTGTTCCATGAGAGGACATAG 1440 0.4646 MSEGIKDPAIKLFGRTISLPRHDEVSANGSSSEPAPPQDCSHHHSPPSSSSFPREVSSTTDHEPERDKEPSRKELTSTQVDEALHEEPKSPTSSCDLENPKTPSTEIETSLQKSPKKGDQSDTTSASEDKAPKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNSSTAVSHYRQIMVPETLQNGSLHSAVLTFGSDPPLCDSMASVLSLAEKTQNGVLNGFHSPKHNINTLNNDTGDDNNSVGASVMASTLCERRDNATSYHEESADKIYHQGFTPQLCLPGSSSSSSSPWPYPWNPAMTPAFYQPVSFYPTPAFWGCMPSPSWSVNYQSAPSSGPNSPSLGKHSRDGDILLQKPGTESSSNIAENSNTVLIPKTLRIDDPTEAAKSSIWSTLGIKNEKGNSLNGGGLFKAFASKGGSDDKKNHVVVEASPVLQANPAALSRSLVFHERT 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01741 479 MobiDBLite consensus disorder prediction 58 92 - -
Spst2g01741 479 ProSitePatterns Zinc finger Dof-type signature. 141 177 IPR003851 GO:0003677|GO:0006355
Spst2g01741 479 Pfam Dof domain, zinc finger 136 193 IPR003851 GO:0003677|GO:0006355
Spst2g01741 479 MobiDBLite consensus disorder prediction 122 137 - -
Spst2g01741 479 ProSiteProfiles Zinc finger Dof-type profile. 139 193 IPR003851 GO:0003677|GO:0006355
Spst2g01741 479 MobiDBLite consensus disorder prediction 23 57 - -
Spst2g01741 479 MobiDBLite consensus disorder prediction 357 395 - -
Spst2g01741 479 MobiDBLite consensus disorder prediction 1 140 - -
Spst2g01741 479 PANTHER CYCLIC DOF FACTOR 2 1 479 IPR045174 GO:0003700|GO:0006355
Spst2g01741 479 MobiDBLite consensus disorder prediction 93 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01741 Spst-Chr2 16363553 16366505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01741 1 478 C2C2-Dof Transcription Factor Family AT3G47500 40.476 5.93e-87 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst2g01741 zf-Dof 4.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01741 - - gmx:100775201 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01741 2 16363553 16366505 Spst3g04706 3 98856711 98859221 PCT