Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01721 ATGGGAAGGTCACCATGCTGTGAGAAGACGGGGCTGAAGAAAGGACCATGGACACCAGAAGAAGACCAAAAGCTCATTGCTTTCATTGAAAAGCAAGGCCATGGAAGCTGGCGTGCTTTGCCTGAAAAAGCTGGGTTGCGAAGATGTGGAAAGAGTTGCAGACTGAGGTGGACTAATTACCTCCGACCTGATATAAAACGAGGAAAGTTCAGCCTGCAGGAAGAGCAAACCATTATTCAACTTCACGCTCTTCTAGGAAACAGATGGTCAGCCATAGCATCTCACTTGCCCAAGAGAACCGACAATGAGATAAAGAACTATTGGAACACCCACCTCAAGAAAAGGCTCGACAAAATGGGCATAGACCCCACCACCCACAAGCCAAAACTCGAGTCCCTAATCCACTTCAAAGACGGTTCCAACCTCAGCCACATGGCTCAGTGGGAGAGTGCTAGGCTAGAAGCTGAAGCCAGACTCGTACAAGAATCCAAGTTGCAAGAACAAAACAACCTCGTATTAACCTCTTCCTCGCCACCTCAACAACAAACTAGGCTCATTCTCAACAAAATCACCCCCCAACAACACCACCAACCCTTACTACCACCGTGCCTCGACGTCCTCAAGGCATGGCAAAGTTCATGGTCAAACAACAACAACAAATACTCATCGCTACACGACAAGAAGAAAACCATGCATGGGCATAGCATGTATGCAATGATGCTTGCCACGGATGACCTTGAATCCCCAACATCCACCTTATGCTTCCCCGAGAGTATGCAAACCAATAATAGTAATGATAATAACGTTATGGTGTCGACCGACCAAGTTGGGTTAATCAATGACAACTATTTACTTGCTGCAACTACTGTGGAAGAGTTTATGACCAAAAGTTTAGGAACGTGTAGTGAGTGCGCAACCGTGAAGGAAGATGTTGGTTGTGATAGTGACAAGAACGAGTCGTGGAGATACTTGACCAAACGCAGCACTGATCATGATGAAGAACATGCTGAAACTGAGAAGAGAATTATGTACGACACGATGTCATTTTCGCAAGACGATGACATTATGGTGGCTGTTGATGCATTCAGAGGTTGTTATGGCAATAATAATGATAATATGGTGGCATTTACACCTCTCTCTAGCAATCTCAATATGGTTGTTGGTTTCAATAACCACGAGCAGGATTTTTATTCCAACCAAGATTTAGCAGCGGAGAACTTGGAAGTAAACTTCGAGGAGAATAAGGATTATTGGAATAGCATGCTTGGTTATAAGTAA 1278 0.446 MGRSPCCEKTGLKKGPWTPEEDQKLIAFIEKQGHGSWRALPEKAGLRRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIASHLPKRTDNEIKNYWNTHLKKRLDKMGIDPTTHKPKLESLIHFKDGSNLSHMAQWESARLEAEARLVQESKLQEQNNLVLTSSSPPQQQTRLILNKITPQQHHQPLLPPCLDVLKAWQSSWSNNNNKYSSLHDKKKTMHGHSMYAMMLATDDLESPTSTLCFPESMQTNNSNDNNVMVSTDQVGLINDNYLLAATTVEEFMTKSLGTCSECATVKEDVGCDSDKNESWRYLTKRSTDHDEEHAETEKRIMYDTMSFSQDDDIMVAVDAFRGCYGNNNDNMVAFTPLSSNLNMVVGFNNHEQDFYSNQDLAAENLEVNFEENKDYWNSMLGYK 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01721 425 FunFam MYB-related transcription factor 13 66 - -
Spst2g01721 425 CDD SANT 69 112 IPR001005 -
Spst2g01721 425 Gene3D - 69 116 - -
Spst2g01721 425 CDD SANT 16 61 IPR001005 -
Spst2g01721 425 Gene3D - 13 66 - -
Spst2g01721 425 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 234 - -
Spst2g01721 425 SMART sant 66 114 IPR001005 -
Spst2g01721 425 SMART sant 13 63 IPR001005 -
Spst2g01721 425 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Spst2g01721 425 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst2g01721 425 FunFam MYB transcription factor 69 116 - -
Spst2g01721 425 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst2g01721 425 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst2g01721 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst2g01721 425 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst2g01721 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01721 Spst-Chr2 16172987 16176077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01721 1 181 MYB Transcription Factor Family AT3G01140 78.307 4.10e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst2g01721 Myb_DNA-binding 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01721 K09422 - gmx:100792994 617.846