Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01677 ATGGAGGAGAGGAAGTTTGTGTGCAAGTATTGCAGCAAGAGGTTCCCTTGTGGGAAGTCTCTTGGTGGCCACATCAGGACTCACATGATGAGTGAGAATTCAGCTTTAGGTAATGTAGAGAGGAAGAATGCTACTAATGCTATGTTAAAGTTGGATGGTGGGAGAAAGAGGAAGAGGGATTTGGGATCTGAAGAAAATGGTGGTGGTGTTAGTGGGGGGAACTACAACATCATTTATGGTCTTAGAGAGAACCCCAAGAAGACCACCAGGTTTGTGCATTCCAATTCCACTTTGCAAGTTGACAAGTTCTGCAAAGAATGTGGGAAGGGATTTCTATCAATGAAGGCTCTTTGTGGTCACATGGCTTGTCACTCTGAAAAGGACAAGGGAGCCAACAGGTTAGAAAGCAGTTCTGGTGGGTTTACTGAGAAGCAGAAATTGGTTATGGATAGTCAATCTGACACTGAAACATCTACGCCAAGGAGGTCCAAGAGAATGAGGTTCAAGACCCTTAGCAATAGCAACAACCAACCTCAATCGTCTGTTTCGGAGGTTGAGCAAGAACAAGAAGAAGTGGCTAGGTGTTTGATGTTGTTGTCTAAGGATTACAGGGGTCGTTTTGCTTTGTTCACAGAGTCTTCTGATAACAACTCGGTTATTCTAGAGGCAAAGTCACCTTCTCTGGAAACCAAGGTTACTATAATGAATAGTAATGGTAAGAATTTTATGTCTAGTGCTTATGTGGAGAAGAAGTTGGGGCAGCCCAAGGACTTGTATGATTCTGATAATTCAGATTCTGGGTATTTTAGATATGGTCCTAAGGAGGTTGATTCCACTGATTCAAATAATGGGCATTTCAAGAATGAGGTTAAGCCTTCCAAAGTCGGGTACTTGTCTAAATTTGAGGATTATGATGTTGAGTCGAGGAAAGTGCTAAGCAGGGAAGGAAGCAAGAACATTGAATTTAAGAAATTTGTTTCAGAGGATTGGGAGAATGATAGACAGAATGGTGGGGCTGCAAGAAAATTTGATTCAAAGAAATTTAAGAAGTCCAACTATGATTCTCTTGGCCAAAATTTGGGTGGTGTTTCTGGCAGGAAGATGAGGAATGATTTTGTCAATGATAAGATGAACAGGTACGAGTGCTTAACTAGTGAAAGAGACCATGGTTATGATGATTATGCTTATGAAAGTGATGGAAACAGCACACACTCTGATTCATATCCAGCTCCAAAGGCTTATAGAAAAAGGAATCTCAGTGGCAAAAAGGGGAAGAAGAAATCGAAATCAAGGAAAAGCAAGGTACATGAGTGTCCAATCTGCAACAAAATTTTCAGGTCAGGCCAAGCCTTGGGGGGTCATAAGAGATCCCATTTTATTGGAGGTTCTGAAGAGAACACCCTGGTGATAAGACCAGGTGCTCCTGTTGTTCCTTGTCTCATTGATCTCAACCTACCAGCACCAGATGATGAATAG 1476 0.4187 MEERKFVCKYCSKRFPCGKSLGGHIRTHMMSENSALGNVERKNATNAMLKLDGGRKRKRDLGSEENGGGVSGGNYNIIYGLRENPKKTTRFVHSNSTLQVDKFCKECGKGFLSMKALCGHMACHSEKDKGANRLESSSGGFTEKQKLVMDSQSDTETSTPRRSKRMRFKTLSNSNNQPQSSVSEVEQEQEEVARCLMLLSKDYRGRFALFTESSDNNSVILEAKSPSLETKVTIMNSNGKNFMSSAYVEKKLGQPKDLYDSDNSDSGYFRYGPKEVDSTDSNNGHFKNEVKPSKVGYLSKFEDYDVESRKVLSREGSKNIEFKKFVSEDWENDRQNGGAARKFDSKKFKKSNYDSLGQNLGGVSGRKMRNDFVNDKMNRYECLTSERDHGYDDYAYESDGNSTHSDSYPAPKAYRKRNLSGKKGKKKSKSRKSKVHECPICNKIFRSGQALGGHKRSHFIGGSEENTLVIRPGAPVVPCLIDLNLPAPDDE 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01677 491 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Spst2g01677 491 Pfam C2H2-type zinc finger 6 29 - -
Spst2g01677 491 Pfam C2H2-type zinc finger 435 458 - -
Spst2g01677 491 Pfam C2H2-type zinc finger 104 126 - -
Spst2g01677 491 SUPERFAMILY beta-beta-alpha zinc fingers 103 458 IPR036236 -
Spst2g01677 491 MobiDBLite consensus disorder prediction 416 433 - -
Spst2g01677 491 MobiDBLite consensus disorder prediction 169 186 - -
Spst2g01677 491 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 491 - -
Spst2g01677 491 MobiDBLite consensus disorder prediction 128 186 - -
Spst2g01677 491 ProSitePatterns Zinc finger C2H2 type domain signature. 438 458 IPR013087 -
Spst2g01677 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Spst2g01677 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Spst2g01677 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 436 458 IPR013087 -
Spst2g01677 491 SMART c2h2final6 436 458 IPR013087 -
Spst2g01677 491 SMART c2h2final6 6 28 IPR013087 -
Spst2g01677 491 SMART c2h2final6 102 124 IPR013087 -
Spst2g01677 491 SUPERFAMILY beta-beta-alpha zinc fingers 2 30 IPR036236 -
Spst2g01677 491 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Spst2g01677 491 MobiDBLite consensus disorder prediction 394 435 - -
Spst2g01677 491 MobiDBLite consensus disorder prediction 135 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01677 Spst-Chr2 15726021 15727496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01677 1 491 C2H2 Transcription Factor Family AT1G26610 39.024 1.82e-84 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst2g01677 zf-C2H2_6 5.9e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01677 - - gmx:100805520 619.772