Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01672 ATGGCATCACAAATGGCGATCCTCTTTCGCACGCGCTCCCTCCTCCTTCTGAAACCCTCTTCCCTCGTCAAAACCATATCCACATTACCCTTCCTCTCGCAGGAGCCTCAACTGGTGGACCCCACCCCTCTCCCTCCCAACCCCGCCGCCGGCAGCCCCCTCTACCACCAAAACTGGCGCTCCCCTCTCCCTCCTTCCTCTCCCTCCTCCAACTCGCTCGCCCCCGCCAGTTTATACAACCGTGCCTCCTCCGAACCCCTCGACCCTCACGCGCTTTTCGACCTCTTCGGTGACTGCATGGCCTCGCACCAGTGGACCGAGGTCAAGTACCTCTTCGAGACCTGGGTCCGCGCCCTCGACAAGAATGGCAAGCCCAACAGCCCCGACGTCAACCTCTTCAACCACTACCTCCGCGCCAACCTTATGCTCGGCGCCTCCGCCGCCGATCTCCTTGACCTCGTTGCGCAGATGGATGAGTTCCGTGTCCAGCCGAACACGGCGTCGTTTAACCTCGTTCTCAAAGCCATGTGCGAGGCCAACGAAACCGTCGCCGCTGATAAATTGCTCCAACGGATGCTGCAAACAGGAAATGACGCTCTCCCTGATGACGAATCATATGACTTGGTCATTGGAATGCTCTTTTCCACATCCCAGATTGATACTGCATTGAATTATACAGATCAAATTTTAAAATCTGGTAATGTCTTGTCAATGAAGGTATTTATGAACTGTGTGAGGGCATGTGTCAGAAAGGGAAGGCTTGATACATTGGTGACAATAATTGAAAGGTGCAGGGGATCAGATCAAAACAAAGCTCTTTGCCCCAACTGGGACTTGTGCAATTTTATTGTTGAAACTGCAACTCGAGAGGATAATTGCAAATTAGCTTTTTATGGCCTGGAGTATATGGCTAGGTGGATTGTAAAGGGTGAACGTCAAAGACCCCCTTTATTTCTGTCTGTAGATGAAGGTTTAGTTCTGTCAACTCTTTTGACTGCTGGTAGAACCTATAATTCTGAGTTGCTAGGGGCATCATGGGCTGTTTTGGATCGTTCATTGCGTAAAAAGAAAGCTCCTAATCCTGAGTCATATCTTGGGAAGATATATGCCCTTGCATCATTGGGAAATCTACAAAAGGCTTTTAGTACTCTGAGTGAGTTTGAGTTGGCTTATGGAGACTCTCGTCAAGAAGCTGAAGAATTGTTCTGCCCATTTACTTCATTACATCCATTGGTTATGGCATGCTCCAAGAAGGGTTTTGAGACTCTAGATAATGTTTATTTTCAACTGGAGAATTTAAACCGTGCAGAGAATCCTTATAAATCCGTTGCTGCTCTAAACTGCATTATTTTAGGATGTGCAAACATATGGGACCTTGATCGAGCTTACCAAACTTTTGAGTCAATTGGATCTAATTTTGGGTTGAGTCCTGATATTCATTCTTACAATGGGCTGATGTATGCCTTTGGGAAGCTGAAGAAGACGCATGAAGCTTCAAAAGTGTTCGAGCACCTAATGAGTCTGGGTCTCAAGGCTAATGCAAAATCATATTCTCTACTCATTGATGCCCACTTGATTAATAGGGATGTCAAATCTGCCCTTGCAGTGATTGATGATATGAGAACTGCTGGATTTGAACCGTCAAAAGAGATTCTAAAAAGTGTCAGGCGGCGATGCATGAGAGAAATGGACTACGAAAGTGATGACCGAGTACAATCACTGGCTAATTCCTTGAATTACAGACTGGGTTCAGAAGCCCGGCGGGACATTCTGTTTAATCTTGATTACAGTGTGGGATATGCTTAA 1806 0.4701 MASQMAILFRTRSLLLLKPSSLVKTISTLPFLSQEPQLVDPTPLPPNPAAGSPLYHQNWRSPLPPSSPSSNSLAPASLYNRASSEPLDPHALFDLFGDCMASHQWTEVKYLFETWVRALDKNGKPNSPDVNLFNHYLRANLMLGASAADLLDLVAQMDEFRVQPNTASFNLVLKAMCEANETVAADKLLQRMLQTGNDALPDDESYDLVIGMLFSTSQIDTALNYTDQILKSGNVLSMKVFMNCVRACVRKGRLDTLVTIIERCRGSDQNKALCPNWDLCNFIVETATREDNCKLAFYGLEYMARWIVKGERQRPPLFLSVDEGLVLSTLLTAGRTYNSELLGASWAVLDRSLRKKKAPNPESYLGKIYALASLGNLQKAFSTLSEFELAYGDSRQEAEELFCPFTSLHPLVMACSKKGFETLDNVYFQLENLNRAENPYKSVAALNCIILGCANIWDLDRAYQTFESIGSNFGLSPDIHSYNGLMYAFGKLKKTHEASKVFEHLMSLGLKANAKSYSLLIDAHLINRDVKSALAVIDDMRTAGFEPSKEILKSVRRRCMREMDYESDDRVQSLANSLNYRLGSEARRDILFNLDYSVGYA 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01672 601 Gene3D Tetratricopeptide repeat domain 325 585 IPR011990 GO:0005515
Spst2g01672 601 Pfam PPR repeat 481 509 IPR002885 -
Spst2g01672 601 Pfam PPR repeat 516 545 IPR002885 -
Spst2g01672 601 Gene3D Tetratricopeptide repeat domain 95 303 IPR011990 GO:0005515
Spst2g01672 601 MobiDBLite consensus disorder prediction 59 74 - -
Spst2g01672 601 MobiDBLite consensus disorder prediction 37 74 - -
Spst2g01672 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Spst2g01672 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Spst2g01672 601 Pfam Pentatricopeptide repeat domain 128 176 IPR002885 -
Spst2g01672 601 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Spst2g01672 601 PANTHER OS07G0599000 PROTEIN 1 600 IPR044605 -
Spst2g01672 601 NCBIfam pentatricopeptide repeat 516 548 IPR002885 -
Spst2g01672 601 NCBIfam pentatricopeptide repeat 480 513 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01672 Spst-Chr2 15676223 15681629 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01672 411 548 Miscellaneous Gene Families AT4G11690 23.022 1.00e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01672 - - gmx:100800731 993.416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01672 2 15676223 15681629 Spst2g01672 2 15676223 15681629 ECH