Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01654 ATGGCCGCAGAATTAAATGGGCAGATGGAAAGTTGTACCAGCAACAGCAGTGACAGCAACAATCACTGGAGAGCTGAGGAAGTCATCGGTGGCAACACCGAAGCTCTTCAGGCCCTTAGAGAACTCATCATATTCCCTCTTCACTTCGCTCACGAGGCACAGAAGCTTGGCCTTAAGTGGTCCAGAGGATTGCTGTTGTACGGTCCACCAGGCACTGGAAAGACAAGTTTGGTACGAGCAGTTGTTCGGGAGTGCGGGGCACAGTTGACAATTATCAGTCCACACTCAGTTCATAGAGCACATGCTGGTGAAAGTGAGAGAATTCTCCGTGATGCTTTTAAGGAGGCATCATCTCATGTAGCCCTGGGCAAGCCTTCAGTTATCTTTATAGATGAAATAGATGCCCTCTGTGCTCGTCGAGATTCCAAAAGGGAGCAAGATGTCCGAGTTGCCTCTCAACTCTTTACTCTGATGGACTCAAACAAACCAACCTTTTCTACACCAGGTGTAGTTGTGGTTGCATCAACTAACAGAGTGGATGCAATTGACCCTGCACTAAGAAGGTCTGGACGTTTTGATGCTGAAATTGAAGTTACTGTCCCAAATGAAGAGGACCGCTATCAAATTCTGAAGTTGTATACAAAGACAATTCCCTTGGGTCCTACTATTGACTTAAAGTCTATTGCTGCGTCATGCAATGGATATGTTGGAGCTGATTTGGAGGCTTTGTGTCGTGAAGCTACCATGTTTGCAATTAAAAGATCCTCAAGTACAAAAGATGCTAGTAATTTCAATCTAACAAAGGAAGATTGGAAGAATGCAAGGTCTGTTGTAGGTCCAAGTATAACAAGAGGTGTTACTGTGGAAATTCCCAAAGTTACTTGGGAAGACATTGGTGGATTAAAAGAATTAAAGAAAAAACTCCAGCAAGCTGTTGAATGGCCTATTAAGCATTCTGCTGCTTTTTCAAGATTGGGAATATCCCCTGTACGTGGAATTCTTCTCCATGGGCCTCCAGGATGTTCCAAAACTACCCTTGCCAAAGCTGCTGCACACGCTGCCCAAGCATCTTTCTTTTCCTTAAGTGGTGCAGAATTGTATTCGATGTATGTTGGAGAGGGGGAAGCTTTGCTACGTAAAACATTTCAGAGAGCACGCCTTGCAGCACCCAGTATAATATTCTTTGACGAGGCTGATGTGGTAGCTGCCAAACGGGGTGACAGTTCTAGCAATAGTGCTACAGTTGGAGAGAGACTTTTATCCACTCTGCTAACTGAGATTGATGGCTTAGAAGAAGCAAAAGGAATTCTTGTTTTAGCAGCTACAAATCGCCCCTATGCAATTGATGCTGCACTTATGCGTCCAGGGCGTTTTGATCAGGTTCTGTATGTACCACCACCTGATTTAGAGGCTCGATACGAGATACTTTGTGTTCATACACGGAAGATGAAAACTGGGGATGATGTTGACCTCAGAAGGCTAGCAGAAGACACAGAGCTCTTCACAGGTGCTGAACTGGAGGGATTATGCAAGGAAGCTGGAATTGTAGCTCTAAGGGAAGACATATCTGCTGCCGTTGTTTGTGACCGCCATTTCCAGATAGCAAGGGGTTCTTTAAAACCAGCGTTAACACAAACTGAAATTAACTCGTACTCATCTTTCATAAAGACCTCATCTCGAGCTTTGCCTAGCTGCGCTGAAGCAGGTTTGAAACCAGACAAAGGCAAAAACAACAGGTTGGATTCTCTGTCTTTGGTCAAAATTGGGTTTGTCAGCTGTTTGTTACTTGCTGCTGCTGCTGAATACTATATCATGTATGGCTACCAAAGTGTACATGACATAGCTACCTGA 1851 0.4452 MAAELNGQMESCTSNSSDSNNHWRAEEVIGGNTEALQALRELIIFPLHFAHEAQKLGLKWSRGLLLYGPPGTGKTSLVRAVVRECGAQLTIISPHSVHRAHAGESERILRDAFKEASSHVALGKPSVIFIDEIDALCARRDSKREQDVRVASQLFTLMDSNKPTFSTPGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEDRYQILKLYTKTIPLGPTIDLKSIAASCNGYVGADLEALCREATMFAIKRSSSTKDASNFNLTKEDWKNARSVVGPSITRGVTVEIPKVTWEDIGGLKELKKKLQQAVEWPIKHSAAFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRKTFQRARLAAPSIIFFDEADVVAAKRGDSSSNSATVGERLLSTLLTEIDGLEEAKGILVLAATNRPYAIDAALMRPGRFDQVLYVPPPDLEARYEILCVHTRKMKTGDDVDLRRLAEDTELFTGAELEGLCKEAGIVALREDISAAVVCDRHFQIARGSLKPALTQTEINSYSSFIKTSSRALPSCAEAGLKPDKGKNNRLDSLSLVKIGFVSCLLLAAAAEYYIMYGYQSVHDIAT 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01654 616 FunFam spermatogenesis-associated protein 5-like protein 1 467 553 - -
Spst2g01654 616 Gene3D - 202 282 - -
Spst2g01654 616 FunFam Cell division control protein 48 homolog B 21 199 - -
Spst2g01654 616 PANTHER AAA-FAMILY ATPASE 25 556 - -
Spst2g01654 616 Pfam AAA+ lid domain 488 533 IPR041569 -
Spst2g01654 616 Pfam AAA+ lid domain 223 265 IPR041569 -
Spst2g01654 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 282 IPR027417 -
Spst2g01654 616 Gene3D - 283 467 IPR027417 -
Spst2g01654 616 Gene3D - 13 201 IPR027417 -
Spst2g01654 616 SMART AAA_5 60 202 IPR003593 GO:0016887
Spst2g01654 616 SMART AAA_5 329 468 IPR003593 GO:0016887
Spst2g01654 616 MobiDBLite consensus disorder prediction 1 21 - -
Spst2g01654 616 Pfam ATPase family associated with various cellular activities (AAA) 64 198 IPR003959 GO:0005524|GO:0016887
Spst2g01654 616 Pfam ATPase family associated with various cellular activities (AAA) 333 465 IPR003959 GO:0005524|GO:0016887
Spst2g01654 616 MobiDBLite consensus disorder prediction 7 21 - -
Spst2g01654 616 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 68 87 - -
Spst2g01654 616 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 414 433 - -
Spst2g01654 616 CDD RecA-like_CDC48_r2-like 304 464 - -
Spst2g01654 616 CDD RecA-like_CDC48_NLV2_r1-like 29 198 - -
Spst2g01654 616 Gene3D - 468 558 - -
Spst2g01654 616 FunFam Cell division control protein 48-B-like protein 283 467 - -
Spst2g01654 616 ProSitePatterns AAA-protein family signature. 436 454 IPR003960 GO:0005524|GO:0016887
Spst2g01654 616 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 552 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01654 Spst-Chr2 15565041 15571763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01654 269 554 Calmodulin-binding Proteins AT3G56690 47.203 4.21e-82 276