Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01643 ATGGCGATGATGCAAGGGGTGCAGAAGAACAATCTGTACGTGGGAGGGCTAGCGGAGGAGGTCGACGAATCCATCCTCCACGCCGCCTTCATCCCCTTCGGCGACATCAAGGACATCAAGACGCCGCTCGACCAGACCACGCAGAAGCACCGCTCCTTCGGCTTCGTCACCTTCCCCGAACGCGAAGACGCCGCCGAGCTCTACTGTCGCGTCCTCAGCCGGGAAGGAGAGAAGGAAGAGGAAACTGAGATCAAGGATGATCTTGTGGCCAAGACTGAAGATGAGGTTCTACCAAAAATAGAATTACACTGA 312 0.5609 MAMMQGVQKNNLYVGGLAEEVDESILHAAFIPFGDIKDIKTPLDQTTQKHRSFGFVTFPEREDAAELYCRVLSREGEKEEETEIKDDLVAKTEDEVLPKIELH 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01643 103 PANTHER ATPASE E1 2 66 - -
Spst2g01643 103 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 91 IPR000504 GO:0003723
Spst2g01643 103 SUPERFAMILY RNA-binding domain, RBD 8 66 IPR035979 GO:0003676
Spst2g01643 103 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 65 IPR000504 GO:0003723
Spst2g01643 103 Gene3D - 2 85 IPR012677 -
Spst2g01643 103 SMART rrm1_1 11 85 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01643 Spst-Chr2 15407653 15408277 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01643 9 64 Eukaryotic Initiation Factors Gene Family AT3G11400 41.071 3.67e-07 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01643 - - gmx:100809447 126.331