Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01641 ATGGCGATGATGCAAGGGGTGCAGAAGAACACGCTGTACGTGGGAGGGTTGGCGGAGGAGGTAAACGAATCCATCCTCCACGCCGCCTTCATCCCCTTCGGCGACATCAAGGACGTCAAGACGCCGCTCGACCAGGCCACGCAGAAGCACCGCTCCTTCGGCTTCGTCACCTTCCTCGAACGCGAAGACGCCGCCGCCGCCATGGACAACATGGACGGCGCCGAGCTCTATGGCCGCGTCCTCACCGTCAACTACGCCCTCCCCGAACGCATCAAGGGCGGCGAACAGGGCTGGGCCGCCCAACCTATTTGGGCGGATGCGGATACCTGGTTTGAGCGCCAGCAGCAGGAGGAGGAGATGCGACGGATTGAGACCGAGAATCGCGCGGCGATGCAGGCGGCGGAGGACTTGCACAGGAAACAAGTGACGGAACAGCGGGAGGGAGAGAAGGAAGAGGAAATTGAGATCAAGGATGATCCTATGGCCAAGGCTGAAGCTGAGATTGTACAACAATAG 516 0.6066 MAMMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDAAAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIETENRAAMQAAEDLHRKQVTEQREGEKEEEIEIKDDPMAKAEAEIVQQ 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01641 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Spst2g01641 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Spst2g01641 171 Gene3D - 3 149 IPR012677 -
Spst2g01641 171 MobiDBLite consensus disorder prediction 132 164 - -
Spst2g01641 171 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Spst2g01641 171 CDD RRM_PPIE 12 86 IPR034168 GO:0003723
Spst2g01641 171 SMART rrm1_1 11 84 IPR000504 GO:0003723
Spst2g01641 171 FunFam Peptidyl-prolyl cis-trans isomerase 2 155 - -
Spst2g01641 171 MobiDBLite consensus disorder prediction 132 171 - -
Spst2g01641 171 Coils Coil 113 140 - -
Spst2g01641 171 PANTHER ATPASE E1 2 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01641 Spst-Chr2 15399788 15400415 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01641 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 3.51e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01641 - - ccaj:109797476 301.597