Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01628 ATGGGTAGGGGAAAGGTGGAGTTGAAGAGGATTGAGAACAAGATAAATCGTCAAGTCACGTTTGCAAAGAGGAGGAATGGGTTGCTCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCCTAGGGTGTATTGTTTTCTGGGGGTCTTAATTTTCCCTCCCTCGTTTCATGGGGTGCTTAAAGTTCACATCTTGCTGGTTGCTTTGTGCTTCATGGCCAAGACACTTGAACGGTATCACAGATGCAGTTATGGAGCCTTGGAATTACACCACCAACCTGAAATAGAGACACAGAGGCGCTATCAGGAGTACCTGAAGCTAAAATCCAAAGTGGAGGCACTACAGCAAACACAAAGAAACCTCCTTGGGGAAGAATTGGAGCACTTAGATGTTAAGGAGCTTGAGCACCTTGAACGTCAGCTGGACTCTTCCTTGAAGCAAATCAGGTCTAACAAGTGTTCCAAAGGGTCACCAATATTTTTATCATTGGTGTCTTTGTCTTTGTTGGCTGGATCATTCATGCATGGATCGTGGAAACTTCTGGCTACCAACTCTGTTCTAATGGACACACAGGAGGAGATGCTCCTGGAAACTAATAACATCCTGAGGAACAAGTATTTGTTTCTGGTCTCATCTTGTGGCACCCCATTCGATTGTGTCCATGTTTCACAGTTGGAGGAAATTAACATAGCCCTTCAACCAACATGGGAAGCTAGGGAGCAAAATGCTCCCTTCAATGGCCACCCTCACCAATCAGAGGGATATTATGACACAGCACATTGCAACAGGTTAAATGAAGCAGGAGGAGCTGCAGGAACCTCAGCCCAAAATGCTAGTGAGTTCATGCATGGATGGATGAACTGA 924 0.4589 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGPRVYCFLGVLIFPPSFHGVLKVHILLVALCFMAKTLERYHRCSYGALELHHQPEIETQRRYQEYLKLKSKVEALQQTQRNLLGEELEHLDVKELEHLERQLDSSLKQIRSNKCSKGSPIFLSLVSLSLLAGSFMHGSWKLLATNSVLMDTQEEMLLETNNILRNKYLFLVSSCGTPFDCVHVSQLEEINIALQPTWEAREQNAPFNGHPHQSEGYYDTAHCNRLNEAGGAAGTSAQNASEFMHGWMN 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01628 307 ProSiteProfiles K-box domain profile. 117 232 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst2g01628 307 CDD MADS_MEF2_like 2 107 IPR033896 GO:0000977|GO:0045944
Spst2g01628 307 Gene3D - 13 65 IPR036879 GO:0003677|GO:0046983
Spst2g01628 307 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst2g01628 307 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 203 - -
Spst2g01628 307 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst2g01628 307 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst2g01628 307 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst2g01628 307 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst2g01628 307 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Spst2g01628 307 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst2g01628 307 Pfam K-box region 116 225 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst2g01628 307 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01628 Spst-Chr2 15202630 15213505 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01628 1 225 MADS-box Gene Family AT2G03710 52.444 1.31e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst2g01628 K-box 5.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01628 K09264 - gmx:100811049 365.925