Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01607 ATGTCCGTCACCGGAAACACCAACTGCCACCTGAACGCCGCCGGCGAAATCCTTTCTCGAAATCTCACTCCCACGCTCACACCCAATTCCCCCTTCTCCTTCCCTTTCTCAATTCCCCATCTGGGGAAAGGGAGCCAGGAAGAGGATGAGTACGAGGAAGATGACTTCGGTTCTTCCAAGAAACAAGGGACTTCCTCTGCCCCCAATGCCAACAAAGATGGAAAAGCCATTGATAAGGCTAGTGCGATAAGATCGAAACATTCTGTAACAGAGCAGCGGAGAAGGAGCAAAATAAATGAGAGATTCCAGATATTGAGGGATCTCATACCTCATAGTGATCAAAAGAGGGACACAGCATCATTTTTGTTAGAGGTTATCGAGTATGTTCAGTACTTACAGGAGAAGGTACAAAAGTACGAAGGTTCATATCAAGGTTGGGGTCAAGAGCCCTCAAAGTTGATGCCATGGCCACTCGATGACAAACCTGCAAAACCTCATGCTCAAGATATTCTCAATCTTGAAGAGGCAATTCCAAATGTCCTTTGTACCTTTGGTTCATCTTGCAAGGATATTTTTGTGGTTGCTCCAAACAAGGTTATTTCTATTTTTGAGTCAGGATCAACACCAGATACTAGTCATCCAAGGGGTCTCTTTCTTATACAATATCAAAGGAGATTGATGGAACCTGTCGAAGAACAATTCCAATCTCTCAATTTGTATCCACTAAATACTATTATTCCTACATCAGTTGTAGAGAGAAATAGTCATTGGCGTGTCCAAAGCTTCGCTGGTCAACCTACATCTATAAAGAATGGTCTGGGTCCTGTATCACCTTTTCCTGGGAAGTTTGATGAAAGCAATATTAGTATCTCCCCAACCATGCTTAGTGGCACACAAAACACAATAGATCCTGATCAGAACAGGGATATGGTCAACAAGACAGCAGAGAGGCAACCTGATTTAGCGAGCAAGGGAATACCTCTTCCCTTGCCTATGCATGCAAACATGTCCGTACCTGTCAGAAGTGATGGTGTACATGCACATCCTCTTCAGGGAACTGTTTCTGATGCACAATCAACTGAATGCCCAACTACTAGTGAACTACAGAGTCAGCAAGATGAACTCACAATTGAAGGAGGGACAATTAGCATCTCAAGTGTATACTCCCAAGGGCTATTGAATAATCTAACTCAGGCACTACAAAGTGCTGGTTTAGATCTGTCACAAGCTAGCATCTCAGTTCAGATTAATCTCGGAAAACGAGCAAACAAAGGATTGAGCTGTGGGACCTCTTCTCCCAAGAATCATGATGACCCTCCTTCAAACAATCAAACAATTGCACATTTTAGAGATGCAGGCAGTGGAGAAGACTCGGATCAAGCACACAAACGAATGAAAACGTACAAGTGA 1410 0.4355 MSVTGNTNCHLNAAGEILSRNLTPTLTPNSPFSFPFSIPHLGKGSQEEDEYEEDDFGSSKKQGTSSAPNANKDGKAIDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWGQEPSKLMPWPLDDKPAKPHAQDILNLEEAIPNVLCTFGSSCKDIFVVAPNKVISIFESGSTPDTSHPRGLFLIQYQRRLMEPVEEQFQSLNLYPLNTIIPTSVVERNSHWRVQSFAGQPTSIKNGLGPVSPFPGKFDESNISISPTMLSGTQNTIDPDQNRDMVNKTAERQPDLASKGIPLPLPMHANMSVPVRSDGVHAHPLQGTVSDAQSTECPTTSELQSQQDELTIEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRANKGLSCGTSSPKNHDDPPSNNQTIAHFRDAGSGEDSDQAHKRMKTYK 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01607 469 MobiDBLite consensus disorder prediction 37 95 - -
Spst2g01607 469 CDD bHLH_AtBIM_like 81 156 - -
Spst2g01607 469 MobiDBLite consensus disorder prediction 452 469 - -
Spst2g01607 469 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 82 132 IPR011598 GO:0046983
Spst2g01607 469 Pfam Helix-loop-helix DNA-binding domain 84 133 IPR011598 GO:0046983
Spst2g01607 469 MobiDBLite consensus disorder prediction 425 449 - -
Spst2g01607 469 MobiDBLite consensus disorder prediction 77 95 - -
Spst2g01607 469 FunFam BHLH domain class transcription factor 80 152 - -
Spst2g01607 469 MobiDBLite consensus disorder prediction 425 469 - -
Spst2g01607 469 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 154 IPR036638 GO:0046983
Spst2g01607 469 Gene3D - 80 152 IPR036638 GO:0046983
Spst2g01607 469 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 45 467 IPR044295 GO:0003700|GO:0006351|GO:0046983
Spst2g01607 469 SMART finulus 88 138 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01607 Spst-Chr2 14937666 14945174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01607 217 467 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 42.520 1.69e-47 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst2g01607 HLH 3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01607 - - gmx:100816055 399.823