Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01595 ATGGGAAGATCTCCATGCTGTGATGAAATTGGTTTGAAGAAAGGTCCTTGGACACCTGAAGAAGATCAGAAGCTTGTTAACCACATTCAAAAATATGGTCATGCAAGCTGGAGGGCACTTCCAAAACTAGCAGGACTCAACAGGTGTGGCAAAAGTTGCAGGTTAAGGTGGACGAACTACTTGAGGCCTGACATTAAAAGAGGAAAATTTTCCAAAGAAGAAGAACAAACAATTTTGGATCTCCATGCCATCCTTGGAAACAAATGGTCCGCAATAGCAAGTCACTTACCTGGTAGAACAGATAATGAAGTCAAGAATTTTTGGAACACTCATCTGAAGAAGAAGCTGATTCAAATGGGTTATGATCCAATGACACACCAGCCTCGAACTGATGATATCATCTCAGGCTTGTCTCACCTAATAGCACTGGCTAACCTGAAAGAACTTTTGGATCATCACCATCAACCATGGGAACAAAGCCTATCAAGGCTTCAAGAAGAGGCCATCCAATTGGCCAGGCTCCAAAGCTTACAGCAACACCTCTTGCTGCCACAAGCTTCATTCACAGAGGCAGATCCTAACACAGTTAATAGTATAACAAACAGTACCTCTTTGATGAACAAGGACACCACCATCAATGTTTCAAATGATACTAGTTCTATGTCATCTAATGGAATTGGCAGTGCCCAATTCGTTAATGATTCCATCCCTTTCTCTCACATGCCTGAGTTGAAAACACCACCTTCTTGTTCCTATGAAGCGCCATTAAGTAATAAAGACATGGTTCAATTCTATCAAGCAGAAAGTTACCCTAATTCTCCATGGCTTCTTTCGTGTTCAAGCACTACCCCTTCTTCTCCTTCTTCCCATGTTGTTCCACCAGTTACGACGGAGGTTTCATTGACTAATGTGGAAGATAGTTGCACTATTTGGCCTGAGATCCTTCTAGAGGACCCTTTGTTCAAGATGATTTCCTAG 978 0.4213 MGRSPCCDEIGLKKGPWTPEEDQKLVNHIQKYGHASWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSKEEEQTILDLHAILGNKWSAIASHLPGRTDNEVKNFWNTHLKKKLIQMGYDPMTHQPRTDDIISGLSHLIALANLKELLDHHHQPWEQSLSRLQEEAIQLARLQSLQQHLLLPQASFTEADPNTVNSITNSTSLMNKDTTINVSNDTSSMSSNGIGSAQFVNDSIPFSHMPELKTPPSCSYEAPLSNKDMVQFYQAESYPNSPWLLSCSSTTPSSPSSHVVPPVTTEVSLTNVEDSCTIWPEILLEDPLFKMIS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01595 325 CDD SANT 69 112 IPR001005 -
Spst2g01595 325 Gene3D - 11 67 - -
Spst2g01595 325 CDD SANT 16 61 IPR001005 -
Spst2g01595 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst2g01595 325 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Spst2g01595 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst2g01595 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst2g01595 325 FunFam Transcription factor MYB39 69 130 - -
Spst2g01595 325 SMART sant 13 63 IPR001005 -
Spst2g01595 325 SMART sant 66 114 IPR001005 -
Spst2g01595 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst2g01595 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst2g01595 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 249 - -
Spst2g01595 325 FunFam MYB-related transcription factor 13 66 - -
Spst2g01595 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst2g01595 325 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01595 Spst-Chr2 14804988 14806305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01595 1 324 MYB Transcription Factor Family AT5G10280 49.565 5.57e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst2g01595 Myb_DNA-binding 8.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01595 K09422 - gmx:100785374 488.034