Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01587 ATGACCCCAGCTAGATTTGGAGGCCTTGACCAAAACCAAAGGAAAACGCTTATTAAAGATCTCCATGCACTTCTTTCAAGGCGTAATAAAGGACAATTCAATAAGATAAGAGAAAAACACCCCAGTGAAAGGCAGCCCTTGAGCAATTTTTCACCATCATTTACTGAGGCTGCTTTATCTGTTCCTGCTTTTAGCCTTCTTCTCTTTTTTGCTTCACACACTTGGACAAGTTTGAAGTTCCTTCAGTTCTCAAGAGTGTTCTGGATTCTGGTTGATGCTTGTCATGAAATCGTGTTTGTGGAATTTGTGTTGGGGCTTTTCCACCTTCTGCTGGTGCGGTGGTTTGGTATCGCTTGTCAAGGAGGGGTGGATATGAGTGACAAAGAAAAGTTTGAGGTGGATAGAAACGAGGATCCTATGGGATATTCTAGTGGTATGCACTCTGATTGGAGATTTGGGGGTGGAAATCTTGCAAATTCTTCTGCAGGTTTGGTTGCAGTGGGAAATTCTATGAATGTCAGCAGAGGGGATTTGATTGGTTCTTCTTCATGTTCCTCTGCTTCAATGGTGGACTCATTTGGTCCAAGCTACTGGGATAACAGCACCGGCTCCCAAAACCTGGGATTTTGTGACATTAATGGGGGTTCTTCAAATACTGCTGGAATAAGAAAAGATGGGTTTGGCTTTGGAAGAGCTGGCCAGGATCATCATGGAACACTTGAAATGGGTTGGAACCCTGCTAATTCTATGTTACCAAACGGCCCAGGGATGTTTCCCCACAGTTTATCTCAGTTTCCAACTGATTCTGGATTCATTGAAAGAGCTGCAAGATTCTCATGCTTCAGTGGAGGGAATTTTACGGATATGGTGAACTCATATGGGATTGCTCAATCAATGGGGCTTTATGGGGCTAGAGATGCTATTGCAGGCCATGGGTTGAAATCAGTAACCGGAGGGCAATCTCAAGGAGGTGATATAAATGTAGTTGAAGCAGCAAAAGATTTGTCTCCATCTGTTGAGCATCTGGCTGCTAAAGGAAGCCCTCTCAAGAGTGATAAGAGAAGTGAAGGTCATGTTATGTCTCAAGACGATGGGAAGCAATCTCTTGTTAGGCCTGCTAATGAGTCTGATAGAGCTGAATCTAGTGATGATGGTGGTGGCCAGGATGATTCTCCAATGTTGGAAGGTACTAGTGGAGAACCTTCTATCAAAGTACTAAACTCAAAGAAAAGGAAAAGAAGAGGGCAGGATGCTGATAATGATAAAGCCAATGGGGCTCCTGAAATTCCTAATGAAGCTGCAAAGGACAACTCTGAGAATCAACAGAAGATAGACCATCAACCAACTTCAGCAACCAAGGCTTCTGGGAAGAATGCCAAACTGGGGTCTCAAGCTTCTGATCCACCTAAGGAGGAATACATACATGTTAGGGCTCGCCGTGGTCAGGCAACAAATAGCCATAGCCTTGCAGAGAGAGTTAGGAGGGAAAAGATAAGTGAAAGGATGAAGTTTCTTCAAGACCTTGTACCGGGATGCAGCAAGGTCACCGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAAAGGCAGGTTGAGTTTTTGTCTATGAAACTTGCAACAGTAAATCCTCGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATATTCTTCAACAACGGCCCGGTCCTTCCTCTGCACTAGGGTTTCCTCTAGATATGTCCATGGCTTTTCCCACATTACATCCATCTCAACCAGGGCTGATTCATCCAGTTATTCCCAACATGGCAAACTCATCTGATATTCTTCAAAGAAACATCCATCCGCAGTTAGCTCCCTTGACTGGTGGATTCAAGGAGCCAAATCAGCTGTCTGATGTTTGGGAGGATGAGCTTCACAATGTCGTCCAGATGAGTTTTGCAACAACTGCTCCCCTGAGTAGCCAAGATGTTGATGGTACTGTGTCAGCTAGTCAGATGAAAGTTGAACTTTGA 2010 0.4403 MTPARFGGLDQNQRKTLIKDLHALLSRRNKGQFNKIREKHPSERQPLSNFSPSFTEAALSVPAFSLLLFFASHTWTSLKFLQFSRVFWILVDACHEIVFVEFVLGLFHLLLVRWFGIACQGGVDMSDKEKFEVDRNEDPMGYSSGMHSDWRFGGGNLANSSAGLVAVGNSMNVSRGDLIGSSSCSSASMVDSFGPSYWDNSTGSQNLGFCDINGGSSNTAGIRKDGFGFGRAGQDHHGTLEMGWNPANSMLPNGPGMFPHSLSQFPTDSGFIERAARFSCFSGGNFTDMVNSYGIAQSMGLYGARDAIAGHGLKSVTGGQSQGGDINVVEAAKDLSPSVEHLAAKGSPLKSDKRSEGHVMSQDDGKQSLVRPANESDRAESSDDGGGQDDSPMLEGTSGEPSIKVLNSKKRKRRGQDADNDKANGAPEIPNEAAKDNSENQQKIDHQPTSATKASGKNAKLGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEGLLAKDILQQRPGPSSALGFPLDMSMAFPTLHPSQPGLIHPVIPNMANSSDILQRNIHPQLAPLTGGFKEPNQLSDVWEDELHNVVQMSFATTAPLSSQDVDGTVSASQMKVEL 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01587 669 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 480 551 IPR036638 GO:0046983
Spst2g01587 669 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 366 589 IPR024097 GO:0006355
Spst2g01587 669 MobiDBLite consensus disorder prediction 340 469 - -
Spst2g01587 669 MobiDBLite consensus disorder prediction 443 462 - -
Spst2g01587 669 CDD bHLH_AtBPE_like 472 557 - -
Spst2g01587 669 Pfam Helix-loop-helix DNA-binding domain 485 533 IPR011598 GO:0046983
Spst2g01587 669 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 482 532 IPR011598 GO:0046983
Spst2g01587 669 FunFam Basic helix-loop-helix transcription factor 479 551 - -
Spst2g01587 669 Gene3D - 479 552 IPR036638 GO:0046983
Spst2g01587 669 SMART finulus 488 538 IPR011598 GO:0046983
Spst2g01587 669 MobiDBLite consensus disorder prediction 346 361 - -
Spst2g01587 669 MobiDBLite consensus disorder prediction 370 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01587 Spst-Chr2 14715135 14719391 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01587 123 668 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 43.036 1.44e-116 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst2g01587 HLH 9.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01587 - - gmx:100797720 981.089