Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01576 ATGTCTTTTGTTTATGACTTTTTACTAATGCCTAAGACCTGCAATGAGATGGCTTTCTTCCCAGCAAATTTCATGCTCCAAACCCCTCACCATGATGATCATCAACCTCCACCTTCACTCACGTCAATTCTACCCGCGTGTGCACCTCAAGAATATCATGGGGGAGTGACCTTTCTAGGAAAGAGATCCATGTCATTTTCATCAGGAATTGAGCACGGAGAAGAAGCCAATGCTGAGGAAGATTTGTCTGATGATGGATCACAGGCAGGGGAGAAGAAGAGGAGGCTTAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGGAATAAGCTTGAGCCAGAGAGGAAAATGCAGCTTGCCAGAGCTCTTGGCTTGCAGCCAAGACAAATTGCTATATGGTTCCAAAACAGAAGGGCTAGGTGGAAGACCAAGCAGTTGGAGAAAGACTATGATCTCCTCAAAAGACAGTATGAAGCTGTCAAGTCAGATAATGATGCACTTCAAACTCAGAACCAAAAACTTCAGGCTGAGATATTGGCACTGAAAAGTAGAGAGCCAACTGAATCTATCAACCTTAACAAAGAAACAGAAGGATCCTGCAGCAATAGAAGTGAGAACAGTTCAGACATCAAATTGGATATCTCAAGGACACCAGCTATTGACAGTCCTCTATCTACACATCAGCCAAGCAGACCCCTCTTCCCATCTTCTGCTAGGCCTGCAGGAGTTGCTCAGCTTTTCCAAACTTCTTCACGACCTGAACTGCCATGCCAAAAGATTGACCAAATGGTCAAAGAAGAAAGCCTAAGCAACATGTTTTGTGGCATGGATGATCAATCCGGGTTTTGGCCATGGTTGGAGCAGCAGCATTTCAATTGA 888 0.4459 MSFVYDFLLMPKTCNEMAFFPANFMLQTPHHDDHQPPPSLTSILPACAPQEYHGGVTFLGKRSMSFSSGIEHGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAVKSDNDALQTQNQKLQAEILALKSREPTESINLNKETEGSCSNRSENSSDIKLDISRTPAIDSPLSTHQPSRPLFPSSARPAGVAQLFQTSSRPELPCQKIDQMVKEESLSNMFCGMDDQSGFWPWLEQQHFN 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01576 295 CDD homeodomain 92 148 IPR001356 GO:0003677
Spst2g01576 295 SMART HOX_1 90 151 IPR001356 GO:0003677
Spst2g01576 295 PRINTS Lambda-repressor HTH signature 118 127 IPR000047 GO:0003677
Spst2g01576 295 PRINTS Lambda-repressor HTH signature 127 143 IPR000047 GO:0003677
Spst2g01576 295 MobiDBLite consensus disorder prediction 70 97 - -
Spst2g01576 295 FunFam Homeobox-leucine zipper protein ATHB-13 84 151 - -
Spst2g01576 295 Pfam Homeobox associated leucine zipper 147 187 IPR003106 GO:0006355|GO:0043565
Spst2g01576 295 MobiDBLite consensus disorder prediction 195 215 - -
Spst2g01576 295 MobiDBLite consensus disorder prediction 192 215 - -
Spst2g01576 295 SUPERFAMILY Homeodomain-like 83 149 IPR009057 -
Spst2g01576 295 Gene3D - 84 153 - -
Spst2g01576 295 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Spst2g01576 295 Pfam Homeodomain 92 145 IPR001356 GO:0003677
Spst2g01576 295 Coils Coil 139 187 - -
Spst2g01576 295 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Spst2g01576 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 71 223 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01576 Spst-Chr2 14491506 14494025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01576 13 295 Homeobox Transcription Factor Family AT1G69780 64.333 2.25e-123 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst2g01576 Homeodomain 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01576 K09338 - gmx:100814080 531.561