Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01571 GAGGATGATATACTCAGGGAGCAGATTGGCATCCATGGAACTGAAAATTGGGCAATTATTGCTTCTAAATTCACTGATAAAACGACAAGACAATGCAGAAGAAGATGGTACACTTATTTGAATTCTGACTTCAAGAAAGGAGGATGGTCACCAGAGGAAGACATGCTTTTATGCGAGGCTCAAAAAATATTTGGTAACAGGTGGACAGAAATAGCAAAGGTGGTTTCTGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACACTGTGCAAAAAGAGAGCAAAATATGAAGCCTTAGCAAAAGAGAACAATACTTCATACATCAATTCAAATAACAAAAGGATTTTTCTCCAGCACAGGTGTGATACAGATGTAGCATCAGAATCTGCAGTAGCTTTGAAGAAGCTAAGGAGGTCCCATATCTCTGATGCTGAAGAAAGTATCAACTTTGGAGACAGATCACATAAACAAAATGGGATTCCTATAAATCAGCAATCAAGACCTCCATTTGCAGTTTTAGCTCAAAACTCCCACAATGTCAACTTGCCAGACCAGGACCATGTCTGCAATTTGAAGTTTAGTGATTATGCTCAAAACAACAAGATTCAAGGAACTTTCCTTAAAAAGGATGACCCAAAGATAAATGCGCTGATGCAACAAGCAGAGTTATTAAGCTCACTAGCTCTAAAAGTTGATGCAGAGAACGTGGATCAAAGTCTTGAAAATGCATGGAAGGTTCTTCAAGAGTTTCTAAGCAGAACTAAAGAATCAGACATTCCCAAATATAAGATTCCAGATTTACAGCTTGTAGATCTTAAAGACTTGTTGGAGGACTTGAAGAGCAGTAGTGAGGAAATCCAGCCATGCTGGAGGCAAATGGAACTGTATGAAGACTCTCCAGGAAGTTCTGAATATAGTACAGGATCAACTCTACTCCATCATTCAGCTGGTGAGAATTTGGAACACTCACTAAATCAGGATATTGGGACCGAACTGAATATACAAATGGGAGATCCAGAAGTTAGGGGATGTGACAAAGGGGTTCTTTCTAGTGCAACTCTAGATCAAGATTTATTCTCTTCTTGTGAGCAACAGATAAACAATGATGGCATTGTTTCTGCCTTGTCATGTTTGGAGGAGTTCAGTTCACCTCTTCAAGTTACACCTCTGTTTAGATCCTTAGCTGCTGGAATTCCTAGCCCACAATTTTCAGAAAGTGAAAGGAACTTCCTAATGAAAACACTTGGAATGGAATCTCCATCGCTCAACCCTAGTGTGAACCCATCACAACCGCCACTCTGCAAAAGAGCCCTCCTAATCTGA 1326 0.4012 EDDILREQIGIHGTENWAIIASKFTDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNTSYINSNNKRIFLQHRCDTDVASESAVALKKLRRSHISDAEESINFGDRSHKQNGIPINQQSRPPFAVLAQNSHNVNLPDQDHVCNLKFSDYAQNNKIQGTFLKKDDPKINALMQQAELLSSLALKVDAENVDQSLENAWKVLQEFLSRTKESDIPKYKIPDLQLVDLKDLLEDLKSSSEEIQPCWRQMELYEDSPGSSEYSTGSTLLHHSAGENLEHSLNQDIGTELNIQMGDPEVRGCDKGVLSSATLDQDLFSSCEQQINNDGIVSALSCLEEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSLNPSVNPSQPPLCKRALLI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01571 441 PANTHER MYB PROTEIN-RELATED 1 140 - -
Spst2g01571 441 Pfam Myb-like DNA-binding domain 1 40 IPR001005 -
Spst2g01571 441 Pfam Myb-like DNA-binding domain 46 89 IPR001005 -
Spst2g01571 441 Gene3D - 1 45 - -
Spst2g01571 441 SMART sant 45 93 IPR001005 -
Spst2g01571 441 SMART sant 1 42 IPR001005 -
Spst2g01571 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 40 IPR017930 -
Spst2g01571 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 95 IPR017930 -
Spst2g01571 441 CDD SANT 49 90 IPR001005 -
Spst2g01571 441 ProSiteProfiles Myb-like domain profile. 41 91 IPR001005 -
Spst2g01571 441 ProSiteProfiles Myb-like domain profile. 1 40 IPR001005 -
Spst2g01571 441 Gene3D - 48 120 - -
Spst2g01571 441 CDD SANT 1 40 IPR001005 -
Spst2g01571 441 SUPERFAMILY Homeodomain-like 19 99 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01571 Spst-Chr2 14449640 14454571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01571 35 440 MYB Transcription Factor Family AT1G14350 53.902 2.39e-135 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst2g01571 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01571 K09422 - gmx:100807667 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01571 2 14449640 14454571 Spst2g01571 2 14449640 14454571 ECH
Spst2g01571 2 14449640 14454571 Spst3g02432 3 69133086 69137537 PCT