Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01560 ATGGGAGATAATAGCTTGTTGGATTCTATTGGTGATGGGGAGATTGGTAGTGAAAAGGATCAAAAGCTGGAATCAGCTAAGAAGGAAATGGAAGAGGCTAGAGAAGAAAATAAGATGTTGGAGTTCTTTGACATCCTTCAACAAGACAAACCTGAAGATGCTGCAAATGCTAAAGGTGTATCTAGCCATGAGGAAAATGAAGAGAGTGAACTTGTGTCACTTTCTCTTGGGATGTCATTCAAAAGCAAGACTAAGGATGAGAGGAAGATTTACAAGAGAGATGATGAGGGCATGGATCAAGGACTCAGACTTGGGTTAGATATCAATTTGGATCCTGTAGATCATGCTGCTGAAGCTCTAAATATTTCCAGCACTGAAAGTAGCTTTGGTGAGGGAGGGAAGGACGAGGAACCATGTCCGATGTGGCCACCCAGTAAAGTTTTGAAGACAATGAGAAATGTGGATAAAAGTGAAGCTCAACATGATCAGCCCAAGAAGACTAGGGTTTGCATTAGAGCCAGATGTGATACACAAACGTGGAGAAAATATGGACAGAAAATGGCAAAAGGAAATCCATGTCCCCGAGCTTACTATCGATGCACTGTTTCTCCATCGTGTCCTGTGCAAAGATGTGCTGAAGACATTTCCATATTGATCACCACCTATGAAGGAACACACAATCATCGACTTCCTATGTCAGCAACTGCAATGGCCTGCACAACTTCTGCTGCAGCTTCCATGCTCCAATCTCCCTCATTGAGGTCACAACATGGATATGGACTAGTCAATTCAGCTATATCCTTTATTACCAACTCTAGTGCTCCTAATTACAACCCTACTGATGCCCTAAACTTCTCCACAAACCAGGTTTCAAAACCACATCAATTCTACTTCCCCAACTCATCTATTTCAACCTTGAATTCTCACCCCACCATCACTTTGGACCTTACAGCAACATCCTCAAACTCGAGCCTCACTCACATGCCAAAATACTCATCAACAAGCCTTAATTTTTCCTCAGGTTTCTCTCCTCTACAATCTAGCATGCCTCCATCACCTTGGAGCAGTTATAGTGGTTACTTCAACTCAGAAACACTAACTCATAATAGAAACCATGGTGGTTACTTGTTCAACACTGGAAATCAAAATCAGCCATACCTAGGGCATCTCCATCAACCTATTCACACCAGCAACAATAACTTTTCTCAACGGCCTTTGCCTGATTCCATTGTTGCTGCAACCAAGGCAATCTCAAGCAATCCAAAATTTCAATCAGTGTTAGCAACTGCTCTCACAACGTATGTTGGCAATCTACCACTACCTGAGCAATGGAAGTAA 1338 0.4238 MGDNSLLDSIGDGEIGSEKDQKLESAKKEMEEAREENKMLEFFDILQQDKPEDAANAKGVSSHEENEESELVSLSLGMSFKSKTKDERKIYKRDDEGMDQGLRLGLDINLDPVDHAAEALNISSTESSFGEGGKDEEPCPMWPPSKVLKTMRNVDKSEAQHDQPKKTRVCIRARCDTQTWRKYGQKMAKGNPCPRAYYRCTVSPSCPVQRCAEDISILITTYEGTHNHRLPMSATAMACTTSAAASMLQSPSLRSQHGYGLVNSAISFITNSSAPNYNPTDALNFSTNQVSKPHQFYFPNSSISTLNSHPTITLDLTATSSNSSLTHMPKYSSTSLNFSSGFSPLQSSMPPSPWSSYSGYFNSETLTHNRNHGGYLFNTGNQNQPYLGHLHQPIHTSNNNFSQRPLPDSIVAATKAISSNPKFQSVLATALTTYVGNLPLPEQWK 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01560 445 Coils Coil 16 43 - -
Spst2g01560 445 SUPERFAMILY WRKY DNA-binding domain 173 231 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst2g01560 445 MobiDBLite consensus disorder prediction 13 48 - -
Spst2g01560 445 ProSiteProfiles WRKY domain profile. 176 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst2g01560 445 Gene3D WRKY domain 161 232 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst2g01560 445 MobiDBLite consensus disorder prediction 56 70 - -
Spst2g01560 445 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 18 436 IPR044810 GO:0003700
Spst2g01560 445 SMART WRKY_cls 174 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst2g01560 445 MobiDBLite consensus disorder prediction 125 146 - -
Spst2g01560 445 MobiDBLite consensus disorder prediction 1 72 - -
Spst2g01560 445 Pfam WRKY DNA -binding domain 176 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01560 Spst-Chr2 14303160 14309711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01560 18 318 WRKY Transcription Factor Family AT5G15130 41.765 4.21e-48 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst2g01560 WRKY 4.2e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01560 - - pvu:PHAVU_002G089700g 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01560 2 14303160 14309711 Spst2g01560 2 14303160 14309711 ECH
Spst2g01560 2 14303160 14309711 Spst3g04674 3 98558976 98563009 ECH
Spst2g01560 2 14303160 14309711 Spst9g02323 9 54479520 54484719 ECH
Spst2g01560 2 14303160 14309711 Spst1g01301 1 15747518 15750569 ECH
Spst2g01560 2 14303160 14309711 Spst3g04674 3 98558976 98563009 PCT
Spst3g02846 3 77990590 78002410 Spst2g01560 2 14303160 14309711 PCT