Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01559 ATGTCGCAGGTTGTTCACTCCATCACCTTAAAGCATCTATCACTACCAATCCACTCCTTTGTACCTCCGAAGTTTATTGTTCATTTGAACCGCAACTTTTCTTTCATTCTCCCATCATCATTCCGTGTCAAATGCTACCGCTCCAACCTAGATGAACCCAAACCATTCCCACCACTGCCACAACACCCTCCAGTTGCAGAATTACCGCAAAGGGTGTATGCGGATTACTCCGTTTACACAAGGATGGGTGTGCTCACCTTAACTCCTAAACCTCCGCAATTTGATGCAAAAGCTTCTGGGGCGTTCAGTGTGTCTAGGGAGGGTTATATGTTGCTGCAGTTTGCTCCTTCGATAAGTACCGAAGAACCCATATATGATTGGAACCAAAAGCAGGTATTCTCACTTTCGGTGACTGAAATGGGAACTCTAATTAGCCTTGGTGCAATGGATTCCTGGGAATTTTTTCGTAAGACTGCTAATGCAAAAAGTGGAATTGAAGTCAGAAAAGTTTTGAAGGTGGAGCCACTTCTGGATATTACTGGTCACTCATTTAGCTTAAGTGTTTATAAAAAACCTGTGGACAAGGAGGAAATTGAGGAAAGACTCTATCTCCCTGTTACAAGGGCTGACCTAGCAGTTTTAAGGTCAATTTTCAATTATATCATGCCGTACCTTCTAGGTTGGAATGCCTTTGCAAGCACCATAAAGCCAGAGGTATACAATCAAGTGAACAGAACCAATAGATTGTGA 750 0.428 MSQVVHSITLKHLSLPIHSFVPPKFIVHLNRNFSFILPSSFRVKCYRSNLDEPKPFPPLPQHPPVAELPQRVYADYSVYTRMGVLTLTPKPPQFDAKASGAFSVSREGYMLLQFAPSISTEEPIYDWNQKQVFSLSVTEMGTLISLGAMDSWEFFRKTANAKSGIEVRKVLKVEPLLDITGHSFSLSVYKKPVDKEEIEERLYLPVTRADLAVLRSIFNYIMPYLLGWNAFASTIKPEVYNQVNRTNRL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01559 249 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 65 247 IPR013742 GO:0003697|GO:0006355|GO:0006952
Spst2g01559 249 Pfam Whirly transcription factor 78 217 IPR013742 GO:0003697|GO:0006355|GO:0006952
Spst2g01559 249 Gene3D Transcriptional Coactivator Pc4; Chain A 66 247 IPR009044 GO:0003677|GO:0006355
Spst2g01559 249 SUPERFAMILY ssDNA-binding transcriptional regulator domain 70 245 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01559 Spst-Chr2 14296042 14300750 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01559 41 247 Whirly Transcription Factor Family AT1G14410 49.282 6.37e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Spst2g01559 Whirly 1.3e-39 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01559 K26559 - pvu:PHAVU_002G089800g 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01559 2 14296042 14300750 Spst2g01559 2 14296042 14300750 ECH
Spst2g01559 2 14296042 14300750 Spst2g01559 2 14296042 14300750 PCT