Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01555 ATGGTTTATATGACTGTCCTCCTCTCTAGAAATGCAGTCACCATACCTACCTTGTATGCCAATGTCAAAGAGAATGACGAGTTTTGGAAAAGGCAAGCTAAAATATTAAATGATAAATATTGGCAAGGAAGAGAAGAAGTTGCTGAAGTAGAGAACCAAGAAGCTTATGTTACTGGACCATATAAATTCACCGAAAATGTGACTGATTCTGTTTCAGATATGATAACTGGTGAGATGAACGTTGGACGGAAATTGGCGGGGAAGCTCGCACATGATTCATGCGTGGCAACAAACCCGATTGACAGGTGTTGGAGGTGTGACTCCAAATGGGAAAAGAAACGCAAGAAGCTGGCAAATTGTGTGATAGGTTTTGGTAGAAACGCTATTGGTGGCAAGAATGGTCGAATCTATAAGGTAACCAGTAACTTAGATAAAGAACTGATCAATCCTGTTCCTGGTATTAGACATGCCGTTACCCGAAATGTACCTTTGTGGATCATCTTTTCACGTAGCATGACCATCAAGCTCAGCCAGGAGCTCATAGTGAATAGCGACAAGACCATTGATGGAATGGGGCTGGTTTTACTATCCAATTCGTCAAGAATGACTCGAAGTGATGGTGATGGAATTTCCATCTTTGGCTCTAGCCATGTTTGGATTGACCATGTTTCCATGAGAAACTGTAGTGATGGATTGATTGATGCCATTCAGGGTTCCACTGCTATTACCATATCCAATAGCCATTTCACAGACCACAATGAGGTGATGCTGTTTGGTGCTAGTGACAGCTATACTGCTGATAAGCATCCTACAATTGTTAGTGAGGGCAACCGATTCATAGCCCCTTACGACAATAATGCTAAACGGGTAACAAAGAGGGACTACGCACCAGAGAAAGAGTGGAAAAAATGGCAATGGAGATCAATCAGGGATGAGCTCATGAATGGAGCCATATTCCTAGAAAGTTGGTCTCGTCTAACTAACAGGCCATTCGAAAGGAAGGACATGATATCATCCAAGCCTGGCACATATGTGGGAAGGCTCACTCGCTATGACATACCTTTTCATCTGTTAGAAGTCATCACAAAGTTCTTTCTCTCCATGTTTCTGTGA 1113 0.4241 MVYMTVLLSRNAVTIPTLYANVKENDEFWKRQAKILNDKYWQGREEVAEVENQEAYVTGPYKFTENVTDSVSDMITGEMNVGRKLAGKLAHDSCVATNPIDRCWRCDSKWEKKRKKLANCVIGFGRNAIGGKNGRIYKVTSNLDKELINPVPGIRHAVTRNVPLWIIFSRSMTIKLSQELIVNSDKTIDGMGLVLLSNSSRMTRSDGDGISIFGSSHVWIDHVSMRNCSDGLIDAIQGSTAITISNSHFTDHNEVMLFGASDSYTADKHPTIVSEGNRFIAPYDNNAKRVTKRDYAPEKEWKKWQWRSIRDELMNGAIFLESWSRLTNRPFERKDMISSKPGTYVGRLTRYDIPFHLLEVITKFFLSMFL 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01555 370 SMART amb_all 171 285 IPR002022 -
Spst2g01555 370 Gene3D - 97 268 IPR012334 -
Spst2g01555 370 Gene3D - 269 352 IPR012334 -
Spst2g01555 370 PANTHER PECTATE LYASE 18-RELATED 267 351 IPR045032 GO:0030570
Spst2g01555 370 SUPERFAMILY Pectin lyase-like 98 350 IPR011050 -
Spst2g01555 370 Pfam Pectate lyase, N terminus 38 81 IPR007524 GO:0030570
Spst2g01555 370 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Spst2g01555 370 PRINTS Pollen allergen Amb family signature 179 195 IPR018082 -
Spst2g01555 370 PRINTS Pollen allergen Amb family signature 143 168 IPR018082 -
Spst2g01555 370 Pfam Pectate lyase 203 293 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01555 Spst-Chr2 14270938 14273332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01555 12 349 Polysaccharide Lyase AT1G14420 40.460 3.19e-98 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01555 K01728 - gmx:100810857 441.039