LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst2g01547	ATGGACCTGCGTGCCGCAATCCAGCGATCCTTCGACGACCGTTACACACGCCACGCGCGCAACTCGCTCGACGAATTGCCTGACAGCTTCACCATCACCGACCCCCACATCCCGGGTCACCCTATAGTCTTTGCAAGCCCGGGCTTCCTCAAGCTCACGGGCTACGCACGCAGCGAGGTTCTGGGCCAGACGGCCGCCGTCTTTCAGGGCCCTTGCACTTCCCGGAGGTCTGTCATGGAAATCCGCGAGGCCGTTCGTGAGGAGCGAAACACGCAGGTTGTTTTGCTTAACTACCGCAGGGACGGCACGCCGTTTTGGATGCTCTTCGGTGTTTGTCCTGTGTTCGGCGACGGCGGCGCGGTCGTCCACTTCGTAGCCGTTCAGGTACCGCTTCACAAAAAGGAGCGCTCCGGCGTCCGGGATTTTGGCTTCGGGTGCTGTCGGAAGGAAGTGTGCTCTGATTCGTTATCGGAACTTGGTCGCGTGTGTTCCTTGGAGCAAGTGCTGGAACGTGATGTCATTGAATTGGATAGGGAAGAGCCGAGTGAGGCGAGTGATGAGGAGAAGCGAAGTGCTGCTACTGCCATGGACAATATCTTCTCTGTGCTAACACATTATAGTGAGGCGACGGGCAGATTAGTGTGTCGGAAGAGGTGCAGCATTCCTGACGTGGGTCTTTTAAGCACATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCGCATTTACCGGACATGCCTATTGTTTATGTTAGTGATGCCTTCTTGAAACTGACAGGTTATGCAAGAAATGAAGTTTTGGGTCGCAACTGTAGGATTTTAGGTGGAACAGATACTGATACCTCTACTTTATATCTGATAAAGGAAAGCATTAAAGCTGAAAAACCATGCACAGTACGTATTTTGAATTACAGGAAGGACAAAAGTTCATTTTGGAATTTTCTTCACATCTCACCCGTTCTTGATGCTTCTGGCAAGGTTGCATACTTTGTGGGAGTTCAAGTAGAAGACAGCAATAAAAATGACGATAGCCACCAGTGTTTGAGTCCAGAGAAGAGGCAGTTTAGTGTGGTTGGAGCAGTCAAGGTTGCAGTGAGGAGTTTATCAATGACTGCAGGATCTTCGAAGTCGTAG	1152	0.5017	MDLRAAIQRSFDDRYTRHARNSLDELPDSFTITDPHIPGHPIVFASPGFLKLTGYARSEVLGQTAAVFQGPCTSRRSVMEIREAVREERNTQVVLLNYRRDGTPFWMLFGVCPVFGDGGAVVHFVAVQVPLHKKERSGVRDFGFGCCRKEVCSDSLSELGRVCSLEQVLERDVIELDREEPSEASDEEKRSAATAMDNIFSVLTHYSEATGRLVCRKRCSIPDVGLLSTSLIISLGRIKQSFVLTNPHLPDMPIVYVSDAFLKLTGYARNEVLGRNCRILGGTDTDTSTLYLIKESIKAEKPCTVRILNYRKDKSSFWNFLHISPVLDASGKVAYFVGVQVEDSNKNDDSHQCLSPEKRQFSVVGAVKVAVRSLSMTAGSSKS	383

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst2g01547	383	SUPERFAMILY	PYP-like sensor domain (PAS domain)	244	340	IPR035965	-
	Spst2g01547	383	CDD	PAS	26	127	IPR000014	-
	Spst2g01547	383	FunFam	protein TWIN LOV 1	241	378	-	-
	Spst2g01547	383	PANTHER	PROTEIN TWIN LOV 1	6	373	-	-
	Spst2g01547	383	NCBIfam	PAS domain S-box protein	23	126	IPR000014	-
	Spst2g01547	383	NCBIfam	PAS domain S-box protein	254	339	IPR000014	-
	Spst2g01547	383	ProSiteProfiles	PAS repeat profile.	15	88	IPR000014	-
	Spst2g01547	383	ProSiteProfiles	PAS repeat profile.	254	276	IPR000014	-
	Spst2g01547	383	SMART	pac_2	92	134	IPR001610	-
	Spst2g01547	383	SMART	pac_2	304	346	IPR001610	-
	Spst2g01547	383	FunFam	Protein TWIN LOV 1 isoform D	29	205	-	-
	Spst2g01547	383	SUPERFAMILY	PYP-like sensor domain (PAS domain)	27	128	IPR035965	-
	Spst2g01547	383	Gene3D	PAS domain	12	138	-	-
	Spst2g01547	383	CDD	PAS	250	339	IPR000014	-
	Spst2g01547	383	Gene3D	PAS domain	241	381	-	-
	Spst2g01547	383	SMART	pas_2	17	86	IPR000014	-
	Spst2g01547	383	SMART	pas_2	229	298	IPR000014	-
	Spst2g01547	383	Pfam	PAS domain	28	128	IPR000014	-
	Spst2g01547	383	Pfam	PAS domain	241	340	IPR000014	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst2g01547	Spst-Chr2	14168322	14171737	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst2g01547	14	345	AGC Kinase Gene Family	AT5G58140	30.952	2.01e-58	202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst2g01547	-		-	gmx:100785562	658.292