Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01541 ATGGCGGGTGGCAAGCTTCATCCTGGTTCAAACATGTCACTTCTCCTCCAAAACGAAAGGCTCCCTTGCTCCTCTGAAGTCCTTGAGTCTCTTTGGGCTCACACCTCTAACCCTGCTTCCTTCCAAGGTTCAAAATCTGTGGTTGATTTTGAGAATGTTAGTGGGGGCAGGGTGACGGATAGGCCCTTCTTTCAAGCGTTGGAGAAGGAAGAGAACTTTGATGAGGATTATGAGGGGTGCTTCCATCAACCGGGTAAGAAAAGGAGACTCACAGGCGAACAAGTTCAGTTCCTTGAAAGGAGCTTTGAGGTAGAGAACAAGCTTGAACCTGAAAGGAAGGTCCAACTTGCAAAGGAGCTTGGCTTGCAGCCAAGGCAAGTGGCTATATGGTTCCAAAACCGAAGGGCAAGGTTCAAGACCAAGCAGCTAGAAAAAGATTATGGCACATTGAAAGCTAGTTATGACAGACTCAAAGGTGACTATGAAAGTCTTCTCCAAGAGAATGACAAGTTAAAAGCAGAGGTGAATTCTCTGGAGAGCAAATTGATTCGTAGAGATAAAGAGAAGGAGAATTCGGACGACAAGTCATCTCCTGATGCTGTCAATTCACCCCACAAAGAGCCTATGGATTTAATTTCAAATTCAACATCTGAAAATGGGACCAAAGTGTCACTCCCTATTATGGTAACATGCAAGCAAGAAGATGCCAATTCAGCCAAAAGTGATGTGCTTGATTCGGACAGCCCACATTGCACTGATGGGAACCATCCCTCTTCATTCGTGGAGCCTGCTGATTCCTCCCATGCCTTTGAACCAGACCACTCAGACTTCTCCCAAGATGAAGAGGATAACCTTAGTGAAAGCCTTTTGACCCTCCCTTGCTTACCAAAGGTTGAAGAAGCCTGCTATGATGACCCTCCTGAAAACTCTTGTAATTTTGGCTTCCAGGTTGAGGATCAAACCTTCTGTTTCTGGCCCTACTGA 984 0.4583 MAGGKLHPGSNMSLLLQNERLPCSSEVLESLWAHTSNPASFQGSKSVVDFENVSGGRVTDRPFFQALEKEENFDEDYEGCFHQPGKKRRLTGEQVQFLERSFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDRLKGDYESLLQENDKLKAEVNSLESKLIRRDKEKENSDDKSSPDAVNSPHKEPMDLISNSTSENGTKVSLPIMVTCKQEDANSAKSDVLDSDSPHCTDGNHPSSFVEPADSSHAFEPDHSDFSQDEEDNLSESLLTLPCLPKVEEACYDDPPENSCNFGFQVEDQTFCFWPY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01541 327 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Spst2g01541 327 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Spst2g01541 327 SMART HOX_1 83 145 IPR001356 GO:0003677
Spst2g01541 327 MobiDBLite consensus disorder prediction 182 201 - -
Spst2g01541 327 FunFam Homeobox-leucine zipper protein HAT5 79 143 - -
Spst2g01541 327 CDD homeodomain 84 142 IPR001356 GO:0003677
Spst2g01541 327 SUPERFAMILY Homeodomain-like 76 143 IPR009057 -
Spst2g01541 327 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 70 222 IPR045224 GO:0003700
Spst2g01541 327 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Spst2g01541 327 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Spst2g01541 327 Gene3D - 80 147 - -
Spst2g01541 327 Pfam Homeobox associated leucine zipper 141 182 IPR003106 GO:0006355|GO:0043565
Spst2g01541 327 Coils Coil 154 188 - -
Spst2g01541 327 MobiDBLite consensus disorder prediction 238 285 - -
Spst2g01541 327 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Spst2g01541 327 MobiDBLite consensus disorder prediction 182 220 - -
Spst2g01541 327 MobiDBLite consensus disorder prediction 267 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01541 Spst-Chr2 14109709 14111306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01541 43 274 Homeobox Transcription Factor Family AT3G01470 42.308 1.93e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst2g01541 Homeodomain 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01541 - K09338 gmx:547565 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01541 2 14109709 14111306 Spst2g01541 2 14109709 14111306 ECH
Spst3g02433 3 69180490 69183832 Spst2g01541 2 14109709 14111306 PCT