Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01539 ATGAGTCGCAAGCGAGACAGGTCTTACTGTCCCCCCTACGACGCCGGCAAGCGCCGCCGCCCCTTGCCGGAGCCTGTGGAGGAGGAGAGACCTACGGCGAGACCTGCACCTCCGTCCGCGGTGGTCGTAATGGGCCTGCCTCAAGACTGCTCTGTCCTCGATCTGAAGTCCCGATTCGAGATCTACGGCGCCATCTCCCGCATCCGGATCGACCGCGACGCTGTCGGCTACATTACTTACAGGGCAAAGGACTCCGCTGATGCCGCCATTGCCGCCGGTATCGACCCCTCCTTCGGAATCACTGTTAGCTCCAAAAAGGTTCAGGTGTTGTGGGCAACAGACCCTCTAGCCATGTGGAGGGAAGGAGTTGGCAATAGAAAGGATAAAGGGTATGTGTCAAAGCTTGTGCGTGCTGAGGCACCTTTGAGCAAGCATGGAAGAGGTAATAGACTTGCTTCAGCTTTAGGGAACACCAAACGTGGTGAGGATAGCTCAGGTAGTTCAGTTTTGCAAGTACCTTTCAAGGGCAGAGAAATTGTTGCTTATGATGATATCCTCTAA 561 0.5508 MSRKRDRSYCPPYDAGKRRRPLPEPVEEERPTARPAPPSAVVVMGLPQDCSVLDLKSRFEIYGAISRIRIDRDAVGYITYRAKDSADAAIAAGIDPSFGITVSSKKVQVLWATDPLAMWREGVGNRKDKGYVSKLVRAEAPLSKHGRGNRLASALGNTKRGEDSSGSSVLQVPFKGREIVAYDDIL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01539 186 MobiDBLite consensus disorder prediction 147 169 - -
Spst2g01539 186 MobiDBLite consensus disorder prediction 1 37 - -
Spst2g01539 186 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 91 IPR000504 GO:0003723
Spst2g01539 186 MobiDBLite consensus disorder prediction 1 31 - -
Spst2g01539 186 CDD RRM_SF 41 81 - -
Spst2g01539 186 SMART rrm1_1 40 110 IPR000504 GO:0003723
Spst2g01539 186 SUPERFAMILY RNA-binding domain, RBD 25 119 IPR035979 GO:0003676
Spst2g01539 186 Gene3D - 16 168 IPR012677 -
Spst2g01539 186 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 114 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01539 1 186 Homeobox Transcription Factor Family AT1G27050 49.756 6.03e-56 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01539 - - ccaj:109806897 287.345