Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01511 ATGGATCCGGCCGCGATCATCAACGCCGCCGCCAACACCACGTCGTACCATCTCTCAGAGATCTGGCAGTACCCGCCTCCCAACGCGCCAGACGTCACTGCCGCGCTGGGCCTGAATAGGGCCCACTTCGGTCACGGGCTCCCGGACTTCGCCCCGGGCTCGACCCGAGACAGCGGGCCGGGTAGCATTGGGCACAAGAAGAGGCGCGACGCCGAGGAGGAGGAATCGGCTAAGGGCGTCTCCAGCAGTAATGGCGTGAAGGAGGGCGGTGGTGGTGGTGATGGGAAACGGGTTAAGACAACGGGAAACCATAAGAGTGAGAGTGCGAGAGGTGAAGGAGAAAGCAGTTCAGGAAAGCTTGCGGAGCAAGGTGGAAAGCCACCTTCAGAGCCTCCTTCTAAGCAAGACTACATTCATGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGGGCTAGACGGGAAAAGATTAGTGAGAGGATGAAAATTCTTCAGGATTTAGTCCCGGGTTGTAATAAGGTTATTGGGAAAGCGTTGGTCCTTGACGAGATAATTAATTATATTCAATCACTTCAGCGGCAAGTAGAGTTTTTGTCAATGAAGCTTGAGGCAGTAAATTCAAGGGTGCCATCCGGAATTGAAGTGTTTCCTCCTAAAGATTTTGGTCAGCAAACATTTGATACAACTGGCATCCCATTCGCTTCTCAAGCTACAAGAGAGTATAGCCGAGGTTCATCACCAGAGTGGTTACATATGCAGGTGGGAAGTGGTTTTGAAAGAGCAACATAG 804 0.5224 MDPAAIINAAANTTSYHLSEIWQYPPPNAPDVTAALGLNRAHFGHGLPDFAPGSTRDSGPGSIGHKKRRDAEEEESAKGVSSSNGVKEGGGGGDGKRVKTTGNHKSESARGEGESSSGKLAEQGGKPPSEPPSKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRVPSGIEVFPPKDFGQQTFDTTGIPFASQATREYSRGSSPEWLHMQVGSGFERAT 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01511 267 FunFam Basic helix-loop-helix transcription factor 143 215 - -
Spst2g01511 267 SMART finulus 152 202 IPR011598 GO:0046983
Spst2g01511 267 MobiDBLite consensus disorder prediction 61 77 - -
Spst2g01511 267 Gene3D - 143 216 IPR036638 GO:0046983
Spst2g01511 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 213 IPR036638 GO:0046983
Spst2g01511 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 196 IPR011598 GO:0046983
Spst2g01511 267 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 66 237 IPR024097 GO:0006355
Spst2g01511 267 CDD bHLH_AtBPE_like 136 221 - -
Spst2g01511 267 MobiDBLite consensus disorder prediction 47 135 - -
Spst2g01511 267 MobiDBLite consensus disorder prediction 92 112 - -
Spst2g01511 267 Coils Coil 193 213 - -
Spst2g01511 267 Pfam Helix-loop-helix DNA-binding domain 150 197 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01511 Spst-Chr2 13847538 13850537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01511 1 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 50.345 1.58e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst2g01511 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01511 - - gmx:100794893 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02477 3 72465386 72468768 Spst2g01511 2 13847538 13850537 PCT