Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01499 ATGGACTGGGGTGACCGGGAAATGAAGTTCGGAGACTTGGCGATCACTCTGATTTGGCTCCTCGGAGGTGATCTCTTCTCGGAGATGAAGAGGTCTAGAGATGAAGTTTTCACGAGTTGTTCTCAACTCAAACGGCCTGTGGTGTCTGCCCGAGGGGAAGCGTCTGGGCAACCGCAGATGACAAATGGAGGTGCTCAGAAACTGACAACTAATGATGCCCTAGCATATCTTAAAGCTGTGAAGGATATATTTCAAGATAAGAGGGACAAGTATGATGACTTTTTGGAGGTTATGAAAGATTTCAAGGCTCAAAGAATTGATACTGCGGGTGTCATTGCAAGAGTGAAGGATTTGTTTAAAGGCCATAGAGATCTTATATTGGGATTTAACACCTTCTTGCCTAAGGGCTATGAAATCACACTTGCATCGGAGGATGAACAACCTGCTCCAAAGAAACCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAGATAAAGACTCGTTTTCAAGGTGATGATCATGTGTACAAATCATTTCTTGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATTACTGAGGTCTACCAGGAGGTTGCTGCTATATTCCAGGATCACCCAGATCTTCTTGATGAGTTTACTCATTTTCTTCCAGACGCATCTGCAGCTGCCTCTACTCACTATGCTTCTGCTCGAAATTCTATGCATCGTGATAGGAGCTCAATTCCAACAATACGGCCAATGCATGTTGAAAAGCGTGAAAAGACAATGGTTTCACATGGTGATCGAGACCCCAGTGTTGATCGTCCTGACCCAGATCATGACAGAGGTTTGTTAAGGATAGAAAAGGAAAGGAGACGTGTAGAGAAGGAAAAGGAACGTAGAGAAGATAGAGACAAGAGAGAACGTGAAAGGGATGACAGAGATTTTGAGCATGACAGGGAGCGATTTCCTCACAAACGGAATCGTAAAGCTGAGGACTCTGGAGCTGAACCATTGCTTGATGCAGATGAAAATTTTGGTACGCGTCCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTACAGTCAAGAATTCGCTTTTTGCGAAAAAGTCAAAGAAAAATTACGAAATCCTGATGACTACCAGGAATTTTTGAAGTGCTTACATATTTACAGTAGGGAAATAATTACCCGACAAGAGCTGCAGTCATTGGTATGGTTTGCATATTAA 1230 0.4179 MDWGDREMKFGDLAITLIWLLGGDLFSEMKRSRDEVFTSCSQLKRPVVSARGEASGQPQMTNGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIARVKDLFKGHRDLILGFNTFLPKGYEITLASEDEQPAPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAAIFQDHPDLLDEFTHFLPDASAAASTHYASARNSMHRDRSSIPTIRPMHVEKREKTMVSHGDRDPSVDRPDPDHDRGLLRIEKERRRVEKEKERREDRDKRERERDDRDFEHDRERFPHKRNRKAEDSGAEPLLDADENFGTRPMSSTCDDKNSLKSMYSQEFAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVWFAY 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01499 409 FunFam Paired amphipathic helix SIN3-like protein 151 222 - -
Spst2g01499 409 Gene3D Paired amphipathic helix 72 134 IPR036600 GO:0006355
Spst2g01499 409 SUPERFAMILY PAH2 domain 150 221 IPR036600 GO:0006355
Spst2g01499 409 MobiDBLite consensus disorder prediction 244 333 - -
Spst2g01499 409 Coils Coil 280 303 - -
Spst2g01499 409 MobiDBLite consensus disorder prediction 230 355 - -
Spst2g01499 409 Gene3D Paired amphipathic helix 355 407 IPR036600 GO:0006355
Spst2g01499 409 FunFam Paired amphipathic helix protein SIN3 354 407 - -
Spst2g01499 409 ProSiteProfiles PAH domain profile. 66 136 IPR003822 GO:0006355
Spst2g01499 409 Pfam Paired amphipathic helix repeat 89 133 IPR003822 GO:0006355
Spst2g01499 409 Pfam Paired amphipathic helix repeat 175 219 IPR003822 GO:0006355
Spst2g01499 409 ProSiteProfiles PAH domain profile. 152 222 IPR003822 GO:0006355
Spst2g01499 409 Gene3D Paired amphipathic helix 151 223 IPR036600 GO:0006355
Spst2g01499 409 FunFam Paired amphipathic helix protein Sin3 72 134 - -
Spst2g01499 409 SUPERFAMILY PAH2 domain 66 135 IPR036600 GO:0006355
Spst2g01499 409 SUPERFAMILY PAH2 domain 355 406 IPR036600 GO:0006355
Spst2g01499 409 PANTHER SIN3B-RELATED 66 402 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01499 Spst-Chr2 13744857 13748375 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01499 57 171 WRKY Transcription Factor Family AT4G12020 50.427 1.92e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst2g01499 PAH 2.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01499 K11644 - gmx:100817626 643.269