Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01435 ATGTATAGGGTTCACTCTCAAATCCTTCTCAGCAATGGTGCCAACACCAACCCCCCTATTATCTCTCCGTATTCTTCTTCTTCTTCTTACACTTCTTCACCCTCGGTACCTTATGTTTCTAACCACCAGAAAGAATCAGCTTTATCCCCAACTTCTTCATCTGGGAATAAAATAAGCCCTGCAATTCTTTTCATCATAGTCGTTTTAGCTGTGGTGTTTTTCATCTTGGGCCTCCTTCACTTGCTTGTTAGATTTATTATAAAGCAGAGGTCTTCTAATTCATCAATTTCCCAATCAAATAGATACCCTGACATGTTCGAATCAGATGCTTACCAGAGACAGTTACAGCAGCTCTTCCATCTTCATGATTCGGGACTGGATCAGGCTTTCATAGATGCTCTCCCTGTCTTTTTTTACAAAGAGATTATAGGCTTGAAAGAGCCATTTGATTGTGCCGTTTGCCTCTGTGAGTTCTTGGAACAAGACAAATTGAGATTGCTGCCTGTGTGTAACCATGCTTTTCACATTGAATGCATAGATACATGGTTGTTGTCCAATTCAACTTGCCCTCTCTGTCGAGGGACTCTGTATTCACCAGGCTTTGCCTTTGAGAACTTAGCTTTTGACTTTGAAAGTCAACATGAGGAAGATGGGATGTCAGGCAGTGGTGTAGGTGGTCTTCGAGCTGGTTCTTTTAACAAAACTGTAGAAAGTCACATAGTGAATGGGAAAAGGGTGTTTTCTGTTAGGCTTGGAAAGTTTAGAAGCACTAATAATGGAGATGGGGTGGAGAGAAGTGAAGGCGAGAGCAGTAGCGGTAATTTGGATGTAAGGAGATGCTATTCAATGGGGTCTTTTCAGTATGTGGTGGGTGATTCAGATCTGAGAGTGGCTTTAGGCCCTCCGAGAGGCGATGGAGGGAGCAGTGACAGCATGAGACAACTGAAGGGAAGAGCAGCCCCAAATGGAAGTTCTTTCATTGATGGGGATGTTGAGGGAAAGAAAATCAGCATTGCAAGGAAAGGGGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCCAGGAAAGATAAGTTGACAGGTTCATCTGATACTCACTTCCATACTTCAACTTTGCCATGGATGAATAAAGCCCGAGTGACAGAACTTGTAAATTGTGCCATAAACGTAATCAGGCAATGCCCTTTGAACGAGAGAATTAATCTTGAGTCAGTTTCTTTGAAGGAGAAGGGGGATGAAAGTGAAGTCAAATTGGGGTTGCTTTTTGGATGCTGTGGTTTTCTCTTAGAGGCTTGGTTGCTTTTTAGCTTTTTTGGGTTAGAAAGAAGTGAAAGTTACAAAGGGAGGATTCTATTCCTTGTTGTGTTGGGTGATTCTTGTGTAAGACGACCCTCTATGGAAGTTATCCTTTTTGGATGGTTTAGCAACCACATGACACCAAATGGGGGGGAACTGAAATGTGGGGTGCAGCAGATTTTCAGATCAGGATTGTGGAGTCTTGAGTGGATGGTGGTAAAAAAAGGTAAAACAAAGAGAAGCGACTGCATCGACTTCAAATTTAAGCCAAAAAGTGGTTCAGATGCTCCAACCATACCTTCCTCATTCGAAGGAATGAAACATGAAAACTGCACCAGTAATTATGGAGAGCTGGGGAAAACGAAGGATTTTGCTCATCGCCTTAATGACCCCTAA 1692 0.4255 MYRVHSQILLSNGANTNPPIISPYSSSSSYTSSPSVPYVSNHQKESALSPTSSSGNKISPAILFIIVVLAVVFFILGLLHLLVRFIIKQRSSNSSISQSNRYPDMFESDAYQRQLQQLFHLHDSGLDQAFIDALPVFFYKEIIGLKEPFDCAVCLCEFLEQDKLRLLPVCNHAFHIECIDTWLLSNSTCPLCRGTLYSPGFAFENLAFDFESQHEEDGMSGSGVGGLRAGSFNKTVESHIVNGKRVFSVRLGKFRSTNNGDGVERSEGESSSGNLDVRRCYSMGSFQYVVGDSDLRVALGPPRGDGGSSDSMRQLKGRAAPNGSSFIDGDVEGKKISIARKGESFSVSKIWQWSRKDKLTGSSDTHFHTSTLPWMNKARVTELVNCAINVIRQCPLNERINLESVSLKEKGDESEVKLGLLFGCCGFLLEAWLLFSFFGLERSESYKGRILFLVVLGDSCVRRPSMEVILFGWFSNHMTPNGGELKCGVQQIFRSGLWSLEWMVVKKGKTKRSDCIDFKFKPKSGSDAPTIPSSFEGMKHENCTSNYGELGKTKDFAHRLNDP 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01435 563 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 53 351 - -
Spst2g01435 563 SUPERFAMILY RING/U-box 130 199 - -
Spst2g01435 563 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Spst2g01435 563 Pfam Ring finger domain 150 193 IPR001841 -
Spst2g01435 563 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 198 IPR013083 -
Spst2g01435 563 FunFam RING-H2 finger protein ATL46 113 198 - -
Spst2g01435 563 MobiDBLite consensus disorder prediction 301 324 - -
Spst2g01435 563 SMART ring_2 151 192 IPR001841 -
Spst2g01435 563 CDD RING-H2_EL5-like 150 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01435 Spst-Chr2 13086218 13093271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01435 52 363 C3H Transcription Factor Family AT2G18650 41.765 5.25e-59 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01435 - - gmx:100805154 575.089