Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01427 ATGTCGCTGTCGGCTCCCTCCCTCCAAGCTCCTTCAAAAGCACGTTCGCTTTCCACTTCTCCAGCGCCACGCGTCGCTTTCTCAGAACACTTATCTTCACGGATCCGCAGAACCCCACACCAACCACAAAATTCCAACACAAAACTTTCCATGATCCGAAACACACGAGGGTCGGGTCGCCGGATTCTAACTTTCCCGGCGGTTCATCCATGCGAGAGTATCACTCCCTCTATCCTTCTCCCTTCACTCATCACTCTCTGCAACGCTATTTCCTCTTTCCAGCACAGGTTCTCGTGTTTCCCTTGCAACAAGCGAAACGCGAAAAACGCGATTCGTTTGATCCGGCTTCTCCAACCTTTCCTTCATGAAATCCGAGACTGCCATTCGGGTCTTCCTGACCCCGCAACCCTGAGCCTCTCCGAGCTCCATTTAACTTGCCAGAAGCTTCTTTTCCTTCTTGAAGATCTCGCTTGTGAAGGTGCAAAGCTTTACATGTTGATGGAATCGGATCGGGTCGCCTCTCAATTCCGGGTCATATCCAGATCCGTGGCCACTGCTTTGGACGTTTTCCCTTTCGGTTCTGTGGAGATCTCTGAAGAAACTAAAGAGCATATTTTTCTTCTCAATGAACAAGCAAGGAAGGCCAGGTTTGAATTTGAGGAAGAAGACAAACGGGCTGTGATGAGAGTCGTGTCGAGTTTGACCCGGTTTGAGAACCGGGTTGCTCCGGATGAGGGTGATCTGAAGTGGGTCATTGAGTATATAGGTGTTAAAGGGTGGAGTGAGTGTAACAAAGAGGTGAAGTTTTTGGAGGGAGAAATTGGGTTTGAGGGCTTCGATGAGAAGAGGAATAAGGTGATACTTTTGTGTAGTTTGGTGGGGTTCATGAGTTGTTGTAGATGCATTGTGATGGAAGTTGTTGACTGTGAAGAGAGTAGCAAAAAATTTGACGGGAAAAGAGAAAGTAGTGTTGAAAGTGAGATTGATCTGAGTTTGAGTGGTCTTAACTCAGATGATTTTCGATGTCCAATCTCTTTGGAACTGATGAGTGATCCAGTTACAATAGAGACAGGTCATACATATGATCGTTCTTCAATTCTGAAGTGGTTCAGACGTGGGAATTTGACGTGTCCCAACACGGGTAAACGGCTTATGACCACTGAAATGGTTCCAAACTTGGTGCTTCGGAAGTTGATTCAGCAATATTGCTATGCGAATGACATAGGCATTCCCTTTGTTGATTTGGGTCGCAGGAATCGTGAGATTACTGGGAAAGTGGAGCCTGGGAGTGTAGCAGCAGAGGGAGCAATTAGAATGTTGGCTAGTTTTCTAAAAGGCAGGATTGAGAATGGAAGTGAGGAAGAAATGAACAGAGGTGCATTTGAGATAAGGCTTCTTTCCAAGACAAGCGTTTTTAATAGGTCTTGTTTGGTGGAAGCTGGTTTGGTTCCTCTTTTGTTGAGGTTGTTGTCATCGAGAGATTCGTTGACTCTAGACAATGCTTCTGCTGCCCTTCTAAACCTCTCAAAATGTTCAAAGAGTAGAAGTGTGATGGTTGAGAAATGGGGCCTGGAATTGATTGTAGGGGTGCTAAAGAAGGGTGTGAAGATTGAAGCTCGCCAGCATGTTGCTGCTGTGTTGTTTTACCTTAGCGTTGAGTATGGGCACTTGATAGGGAAGGAGCCAGAAGCAATTCCATCATTGATAATGCTAGCCAAAGATGGCTCTTATCGAAGTAAGAAAAATGGGTTGGTTGCTATTTTTGGCCTGCTTAAGGACCCTGAAAATCATAGGAGGGTGGTTGAAGGTGGAGCAGTTCCTTTGCTAGTTGATATCTTGAAAGGATCTGAGAAGGAAGACCTTATCACAGATTCGCTAGCAGTTCTAGCAACTCTGGCAGAGAAGAGTGAAGGAATGATAGCAATTCTTGACGGAGAGGCTTTGCATGTAGCTGTTCAAATGTTGAGTTGTTCCACCTCGAGGGTGGGGAGGGAGCACTGTGTGGCTTTACTGCTTTCTTTGTCACTAAATGGTGGAGAGGACGTGGTTGCTTATTTGGTCAAGAGTCCTTCTCTTATGGGATCCTTGTATTCCCAACTCAGTGAAGGCACACCTCGAGCAAGCAAGAAAGCCAGTGCTCTCATTAGGGTCCTCCATGATTTTAACGAAAGGAGGTCCTCTAGCTTTAAGATTTCAGTTATTCCACGAGAACAGTTCATTCATGTTCGGTAA 2232 0.4583 MSLSAPSLQAPSKARSLSTSPAPRVAFSEHLSSRIRRTPHQPQNSNTKLSMIRNTRGSGRRILTFPAVHPCESITPSILLPSLITLCNAISSFQHRFSCFPCNKRNAKNAIRLIRLLQPFLHEIRDCHSGLPDPATLSLSELHLTCQKLLFLLEDLACEGAKLYMLMESDRVASQFRVISRSVATALDVFPFGSVEISEETKEHIFLLNEQARKARFEFEEEDKRAVMRVVSSLTRFENRVAPDEGDLKWVIEYIGVKGWSECNKEVKFLEGEIGFEGFDEKRNKVILLCSLVGFMSCCRCIVMEVVDCEESSKKFDGKRESSVESEIDLSLSGLNSDDFRCPISLELMSDPVTIETGHTYDRSSILKWFRRGNLTCPNTGKRLMTTEMVPNLVLRKLIQQYCYANDIGIPFVDLGRRNREITGKVEPGSVAAEGAIRMLASFLKGRIENGSEEEMNRGAFEIRLLSKTSVFNRSCLVEAGLVPLLLRLLSSRDSLTLDNASAALLNLSKCSKSRSVMVEKWGLELIVGVLKKGVKIEARQHVAAVLFYLSVEYGHLIGKEPEAIPSLIMLAKDGSYRSKKNGLVAIFGLLKDPENHRRVVEGGAVPLLVDILKGSEKEDLITDSLAVLATLAEKSEGMIAILDGEALHVAVQMLSCSTSRVGREHCVALLLSLSLNGGEDVVAYLVKSPSLMGSLYSQLSEGTPRASKKASALIRVLHDFNERRSSSFKISVIPREQFIHVR 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01427 743 CDD RING-Ubox_PUB 338 389 IPR045210 -
Spst2g01427 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 481 523 IPR000225 GO:0005515
Spst2g01427 743 SMART arm_5 511 552 IPR000225 GO:0005515
Spst2g01427 743 SMART arm_5 470 510 IPR000225 GO:0005515
Spst2g01427 743 SMART arm_5 593 634 IPR000225 GO:0005515
Spst2g01427 743 Pfam U-box domain 338 406 IPR003613 GO:0004842|GO:0016567
Spst2g01427 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 604 647 IPR000225 GO:0005515
Spst2g01427 743 FunFam RING-type E3 ubiquitin transferase 336 408 - -
Spst2g01427 743 SUPERFAMILY RING/U-box 338 408 - -
Spst2g01427 743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 409 IPR013083 -
Spst2g01427 743 MobiDBLite consensus disorder prediction 1 24 - -
Spst2g01427 743 Gene3D - 421 728 IPR011989 -
Spst2g01427 743 FunFam RING-type E3 ubiquitin transferase 418 729 - -
Spst2g01427 743 Pfam Armadillo/beta-catenin-like repeat 473 509 IPR000225 GO:0005515
Spst2g01427 743 ProSiteProfiles U-box domain profile. 335 409 IPR003613 GO:0004842|GO:0016567
Spst2g01427 743 PANTHER U BOX DOMAIN-CONTAINING 104 718 - -
Spst2g01427 743 SUPERFAMILY ARM repeat 434 719 IPR016024 -
Spst2g01427 743 SMART Ubox_2 339 402 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01427 Spst-Chr2 12986954 12989314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01427 51 741 U-box Gene Family AT1G60190 44.539 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01427 - - vra:106779024 1139.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01427 2 12986954 12989314 Spst2g01427 2 12986954 12989314 ECH