Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01405 ATGTCAACACTGAACCATCTTTTTGATCTTCCTGAACAGATATGTTACGTACAATGTGGATTCTGTACCACTATTTTAATGGTAAGTGTTCCATGCAGCAGTTTGTCAATGGTGGTAACAGTAAGATGCGGGCACTGCACAAGCCTCCTTTCTGTAAACATGATGAAAGCTTCTTTTGTCCCGTTCCACCTTTTGGCATCTCTTAGTCATCTGGAGCCAAAAGAGAGTAGTCCAGAACAAGATGCTAACAAGACTTTGAACAGCCACAGTGCATCCCTGATGACCTATTCTGATTGTGAGGAAGAGGATGTCATTCCAATGAGTAATATTGTGAATAAACCCCCAGAAAAGAGACAGCGAACACCATCAGCTTATAACTGCTTTATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAAAACCCTGACATGGCTCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCTAATTTTCCCCCAACTCAGTGCAAAGGAGATGAAGAGAGCTGTAGCCAGACAGATCAACTTGTGGATCTTGACTCCCACCTGGACCCTCCTGATGCTGAGGTCAATGAAGAAGATGGTCAAGGTTTCCGTGGAAGAAAGATCCCCAGGAACTCCATCTTGGAAAGGACGCCGTTTGAGTGA 651 0.4363 MSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLSHLEPKESSPEQDANKTLNSHSASLMTYSDCEEEDVIPMSNIVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCKGDEESCSQTDQLVDLDSHLDPPDAEVNEEDGQGFRGRKIPRNSILERTPFE 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01405 216 MobiDBLite consensus disorder prediction 164 216 - -
Spst2g01405 216 MobiDBLite consensus disorder prediction 181 209 - -
Spst2g01405 216 Pfam YABBY protein 11 163 IPR006780 GO:0007275
Spst2g01405 216 SUPERFAMILY HMG-box 109 162 IPR036910 -
Spst2g01405 216 FunFam Axial regulator YABBY 4 108 174 - -
Spst2g01405 216 Gene3D High mobility group box domain 108 172 IPR036910 -
Spst2g01405 216 PANTHER PROTEIN YABBY 6-RELATED 2 174 IPR006780 GO:0007275
Spst2g01405 216 MobiDBLite consensus disorder prediction 165 179 - -
Spst2g01405 216 CDD HMG-box_SF 120 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01405 Spst-Chr2 12816040 12817901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01405 2 216 C2C2-YABBY Transcription Factor Family AT1G23420 59.211 3.95e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Spst2g01405 YABBY 1e-62 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01405 K25796 - gmx:100804172 397.127