Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01398 ATGGATGAAATGTACGGAGTGCCGGAGTACGCCGACAAGCCACTCATGACTCCGGAGAGTCTGATTTTCCCCCCGGACTACCCCGCCTTCCTCGCCGCTGCTCGGATTCCCATCTTCGGATCCGACGACATCTTCTCGTCCGAGACCTCCGCCGTCGCCGCTGCTCCAGCCGGAATTCCCCGCCACCAGGACGATGACGTCGCAACCACCGTTATGAAGGCCAAAATCGCCTCCCACCCTCACTACCCTCGCCTCCTCCAAGCTTACATCGATTGCCAGAAGGTTGGGGCGCCTCCGGAAATCGCGCGTTTGTTGGAGGAAATCCGGCGAGAAAACGACCTGTGCAAGAGCGACGTTGTTTCCACGTGCTTTGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACCTACTGCGACATGCTCGTGAAGTATAAATCCGACTTGGCTCGCCCTTTCGACGAAGCAACCACTTTCCTCAACAAGATCGAAATGCAGCTCAGCCATCTCTGCACTGGCGCTTCCGTTTCCACAGTTTCTGATGATGGGTGTGTGTCTTCGGACGAAGATTTGAGTACCGGAGATGGTGATGGTCTAGATGGGCAAGCAAAGGGTGAAGATCGCGAGCTCAAGGATAGACTTTTACGTAAGTTTGGGAGTCACATTGGTAGTTTGAAACTGGAGTTTTCGAAGAAAAAAAAGAAGGGTAAGCTTCCGAAAGAAGCAAGACAAACATTACTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCTACGGAAGCTGATAAGATTGAACTGGCTAAGTCAACAGGGCTAGACCAGAAGCAAATTAATAATTGGTTTATTAACCAAAGAAAACGTCATTGGAAACCATCAGAGAATATGCAGTTTTCCATGATGGAAAATCTCAACGGACGGTTCCTTGCCGAAGAATGA 936 0.5085 MDEMYGVPEYADKPLMTPESLIFPPDYPAFLAAARIPIFGSDDIFSSETSAVAAAPAGIPRHQDDDVATTVMKAKIASHPHYPRLLQAYIDCQKVGAPPEIARLLEEIRRENDLCKSDVVSTCFGADPELDEFMETYCDMLVKYKSDLARPFDEATTFLNKIEMQLSHLCTGASVSTVSDDGCVSSDEDLSTGDGDGLDGQAKGEDRELKDRLLRKFGSHIGSLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLNGRFLAEE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01398 311 SMART KNOX2_2 120 171 IPR005541 GO:0003677|GO:0005634
Spst2g01398 311 SMART HOX_1 230 295 IPR001356 GO:0003677
Spst2g01398 311 MobiDBLite consensus disorder prediction 186 205 - -
Spst2g01398 311 SMART ELK_2 208 229 IPR005539 GO:0003677
Spst2g01398 311 Pfam KNOX2 domain 124 170 IPR005541 GO:0003677|GO:0005634
Spst2g01398 311 CDD homeodomain 240 292 IPR001356 GO:0003677
Spst2g01398 311 Gene3D - 227 301 - -
Spst2g01398 311 Pfam Homeobox KN domain 248 287 IPR008422 GO:0003677|GO:0006355
Spst2g01398 311 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 72 298 - -
Spst2g01398 311 ProSiteProfiles 'Homeobox' domain profile. 228 291 IPR001356 GO:0003677
Spst2g01398 311 ProSitePatterns 'Homeobox' domain signature. 266 289 IPR017970 GO:0000981|GO:0006355
Spst2g01398 311 ProSiteProfiles ELK domain profile. 208 228 IPR005539 GO:0003677
Spst2g01398 311 Pfam KNOX1 domain 72 113 IPR005540 GO:0003677|GO:0005634
Spst2g01398 311 SUPERFAMILY Homeodomain-like 229 300 IPR009057 -
Spst2g01398 311 Pfam ELK domain 208 229 IPR005539 GO:0003677
Spst2g01398 311 SMART KNOX1_2 70 114 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01398 Spst-Chr2 12681033 12689279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01398 1 311 Homeobox Transcription Factor Family AT1G23380 67.173 6.62e-147 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Spst2g01398 KNOX2 3.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01398 - - gmx:100794719 509.605