Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01380 ATGGGTTCTCTAACTCCACTTCTTTCTCTTCTGATCCCTCTTCTTGTAACTTCTTGTGTAAGTGTAACTTACTTGGAACCTTTCAAATGCTCCTCTAAGATCAACACATGCAATGCCTCACTCTACCACATAAGCTACAATCACAACACAGATGACATAGCCAACTTTTACTCCGTTAGTCCCTCCCAAATCAAACCTGTAATGCGTGGCACAAAGCAAGATTACCTAATAACAGTGCCTTGTTCTTGCAATACCAATGGCCTTGGCGGATATTTCTATGATACGACCTACAAGGTGAAGCCTAATGACTCGTTTGTGGAGATTAACAACATCGATTACAGTGGCCAAGCTTGGCCTATTAATACAGAAGTGGACCCAAATGAAAACTTAGCAATAAATCTTCCTTGTGGGTGTTCAGAAAAAAGTGACTCCCAAATTGTTGTCACGTATACAGTTCAGCGTAATGATACTCCCACATCAATAGCTTCTCTGCTAAATGCTACGTTTGATGGCATGGTGAGTATGAACGAAGTTCTGGCTGAGAACCCCTCATTCATAGATGTTAATTGGGTGCTATACGTTCCAAGGGAACTGAATGGGTTGCCTTCCGAAGGAAAAGACAAGAAACACAATATAATCATTGGCATATTATCGGGTGTGACATTCTTTTCAGTGATTACTTTGATCATTCTCGTTGTCGTTCTTAGGAGATCCAGGGCCAACGTTGCCTCCAAAAGTGATCCAAATATTTTGTCTAAAAGATCAATTGGACATAGAACTATTTCCATAAAGAACCGAGACTTTCTTACAGAACATATAGAAGATGCAACTCCATTTGATTCAGAAAGACCAGTAATTTATAATCTAGAGGAGATTGAAGATGCTACGAATAACTTTGATGAAACACGAAGGATTGGAGTCGGAGGATACGGGAGTGTGTATTTTGGAATGTTAGAGGAGAAGGAGGTTGCTGTAAAGAAGATGAGGTCTAATAAATCCAAAGAATTCTATGCAGAACTCAAGGCCTTGTGTAAGATCCATCACATTAACATTGTGGAGTTGTTGGGATATGCTAGCGGAGATGACCACCTTTATTTGGTGTATGAGTATGTTCCAAATGGATCTCTAAGTGAACACCTTCATGATCCATTACTGAAAGGTCACCAGCCTCTTTCTTGGTGTGCTAGGATTCAAATTGCATTGGATGCAGCAAAAGGTCTTGAATACATACATGATTACACGAAAGCACGATATGTGCATCGTGATATAAAGACTAGTAATATTCTTCTTGATGAGAGGCTCAGAGCAAAGGTAGCAGATTTTGGACTTGCAAAACTAGTAGAACGAACCAATGATGAAGAATTCATAGCAACAAGGCTTGTTGGAACACCAGGCTACCTTCCACCAGAATCTGTGAAGGAGCTTCAAGTGACTATAAAAACGGATGTATTTGCATTTGGGGTGGTTCTGTCAGAGTTAATAACAGGGAAACGTGCACTATTCCGTGACAACCAAGAAGCCAACCATATGAAATCACTTGTTACAGTTGTTAGCCAAATCTTCAAAAATAAATACCCAGAGACTGTTTTAGAAGATGCTATAGATGGGAATCTTCAACATAGCTATCCCATGGAAGATGTCTACAAGATGGCAGAAGTAGCTCATTGGTGTTTGTTCGAAGATCCAAACGACAGGCCTGAGATGAGGGAGATCGTTGTTGCATTGTCTCAGATTGTTATGTCTTCCACAGAATGGGAAGCATCTCTAGGTGGAGACAGCCAAGTCTTCAGTGGGGTACTTGATGGAAGATGA 1812 0.4056 MGSLTPLLSLLIPLLVTSCVSVTYLEPFKCSSKINTCNASLYHISYNHNTDDIANFYSVSPSQIKPVMRGTKQDYLITVPCSCNTNGLGGYFYDTTYKVKPNDSFVEINNIDYSGQAWPINTEVDPNENLAINLPCGCSEKSDSQIVVTYTVQRNDTPTSIASLLNATFDGMVSMNEVLAENPSFIDVNWVLYVPRELNGLPSEGKDKKHNIIIGILSGVTFFSVITLIILVVVLRRSRANVASKSDPNILSKRSIGHRTISIKNRDFLTEHIEDATPFDSERPVIYNLEEIEDATNNFDETRRIGVGGYGSVYFGMLEEKEVAVKKMRSNKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARIQIALDAAKGLEYIHDYTKARYVHRDIKTSNILLDERLRAKVADFGLAKLVERTNDEEFIATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVLSELITGKRALFRDNQEANHMKSLVTVVSQIFKNKYPETVLEDAIDGNLQHSYPMEDVYKMAEVAHWCLFEDPNDRPEMREIVVALSQIVMSSTEWEASLGGDSQVFSGVLDGR 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01380 603 SUPERFAMILY LysM domain 148 195 IPR036779 -
Spst2g01380 603 Gene3D LysM domain 140 199 IPR036779 -
Spst2g01380 603 ProSiteProfiles LysM domain profile. 148 194 IPR018392 -
Spst2g01380 603 Pfam Protein kinase domain 300 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g01380 603 SUPERFAMILY Protein kinase-like (PK-like) 283 575 IPR011009 -
Spst2g01380 603 Gene3D Transferase(Phosphotransferase) domain 1 371 592 - -
Spst2g01380 603 Gene3D Phosphorylase Kinase; domain 1 279 370 - -
Spst2g01380 603 SMART serkin_6 299 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst2g01380 603 ProSitePatterns Protein kinases ATP-binding region signature. 305 327 IPR017441 GO:0005524
Spst2g01380 603 FunFam PTI1-like tyrosine-protein kinase 3 371 589 - -
Spst2g01380 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Spst2g01380 603 FunFam Kinase family protein 273 370 - -
Spst2g01380 603 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 20 597 IPR044812 GO:0019199|GO:0045087
Spst2g01380 603 ProSiteProfiles Protein kinase domain profile. 299 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01380 Spst-Chr2 12481590 12485776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01380 279 603 Receptor kinase-like Gene Family AT1G51940 51.807 3.38e-116 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Spst2g01380 Pkinase 4.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01380 - - gmx:100800907 1011.91