Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01352 ATGGATGGAGGTGATGGTGTACGTACACAGAGGAAGCAAGTGTGTGTGAGAGAGAGAAAAGCTGCAAGAGAATATAGAAATGCAAATCACGGTCGTCCCATTCTTTTTCTTGTCATGTCACTATCCACTTCCCTTTTCCCCGCAATTCCCTCTCTATCTCTCCCTCTCACTGTGGAGCTACCTCGACGGACACAACTTTTCCGTCCCGTAATTTCTTCTCTTCGTTATTCATCGTTCACCTTGTTTTTCATGCTTACCTCAACGGAGAAAGGGCTTGTGGCGTCACTGCACGGTGTTTTCGCGTGCAAGGAAGAGAAGAAAGAGAGAGAGGGACATGCATATGTTGTCGTTGTAGTCATAAGTTTACAAGTTGACGATTTTGGTCAATTTTGCGGAATGGAATTTGAGGATCAAGAGGAGCAAGAGGAGGAGTTGTGTATCAGTCCCGCGGCTTACGACCCCACCCGGATGAAGGTTCCAGTTGGACCGGAGGCCGTCATGGCTCCTCAGCCAGTGAGGAGCAACATCAACAACGGTGGGACGGGGAGGGCGCGCTACAGAGAGTGTCTGAAGAACCACGCTGTCGGCATAGGTGGCCACGCACTCGACGGCTGCTGCGAGTTCATGGCGGCGGGGACCGAAGGTACCATCGACGCGCTCAAATGTGCCGCCTGTAGCTGCCACCGCAACTTCCACCGCAAGGAGAGCGACGGGGTTGGCGGCGGTGACCCGTACTTGCTTTCGCACCACCACCTGCACCACCCTCCACCACAGCAGTTTGCTGCTTATTACCGGACCCCAACCGGGTACCTTCAAGTTGGGGGGCAGGCGCGCCCAGGGGGGACGCTGGCCCTGCCGTCGACTTCTGGCGGTGGCGGGACGCAGAGCACTCGGGAGGATCAGGAGGACGTTTCGAACCCGAGTGCAGGAGGAACTGGGTCCAAGAAACGGTTCAGAACAAAGTTCACACAGGAGCAAAAAGACAAAATGCTTGAACTTGCAGAAAAACTAGGGTGGAGGATTCAGAAACACGACGAGGGTGTGGTCCAAGCCTTCTGCAACGAAACCGGGGTGAAGCGTCACGTTCTCAAGGTTTGGATGCATAACAACAAGCACACTCTCGGTAAGAAGCCCTAG 1137 0.5427 MDGGDGVRTQRKQVCVRERKAAREYRNANHGRPILFLVMSLSTSLFPAIPSLSLPLTVELPRRTQLFRPVISSLRYSSFTLFFMLTSTEKGLVASLHGVFACKEEKKEREGHAYVVVVVISLQVDDFGQFCGMEFEDQEEQEEELCISPAAYDPTRMKVPVGPEAVMAPQPVRSNINNGGTGRARYRECLKNHAVGIGGHALDGCCEFMAAGTEGTIDALKCAACSCHRNFHRKESDGVGGGDPYLLSHHHLHHPPPQQFAAYYRTPTGYLQVGGQARPGGTLALPSTSGGGGTQSTREDQEDVSNPSAGGTGSKKRFRTKFTQEQKDKMLELAEKLGWRIQKHDEGVVQAFCNETGVKRHVLKVWMHNNKHTLGKKP 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01352 378 MobiDBLite consensus disorder prediction 275 320 - -
Spst2g01352 378 NCBIfam homeobox domain, ZF-HD class 315 371 IPR006455 -
Spst2g01352 378 Pfam ZF-HD protein dimerisation region 184 236 IPR006456 -
Spst2g01352 378 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 175 374 - -
Spst2g01352 378 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 186 235 IPR006456 -
Spst2g01352 378 MobiDBLite consensus disorder prediction 287 313 - -
Spst2g01352 378 SUPERFAMILY Homeodomain-like 303 376 IPR009057 -
Spst2g01352 378 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 185 235 IPR006456 -
Spst2g01352 378 Gene3D - 300 375 - -
Spst2g01352 378 FunFam Zinc-finger homeodomain protein 2 302 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01352 Spst-Chr2 12181704 12187432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01352 133 374 ZF-HD Transcription Factor Family AT4G24660 48.971 1.56e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Spst2g01352 ZF-HD_dimer 6.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01352 - - gmx:100808910 377.096