Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01338 ATGGTTTTCCTTCGGCAGGGCATGCAACATGTTCGAAGTTACTATAACTCAGAAGCTCAAATGATAAGAGGTGGCTTTCCTCAGCCATTCATCTCTAGGACGAATAAAACCAGTTTCTTGAAGCCAAGATCAAAGGCAGAGATCAAAGTTGTGGCTGCAAAGAAACATAGTGAAGCTGAAAAGAGACGTAGAATGAGAATCAATGGTCAATATGAAACCCTCCGAGCTATCCTCCCCAACTTGATCAAACATGGTGAAATAGATTTTGTCATGAATCAACAGAAGGACAAGGCATCAGTGTTGGCAGAGACTATCAAGCAAGTGAAGGAGCTGAAGAAAAAGGTATCAAAACTGGAACAAGATAGTTATGGTAACTCATCAAAGGATGTTGTTAAGTTTCCCAGTGGGGCAGACAGACTGAACTTGGAAAAATGTAATAATGAGGAGGGCCTAGTGAAGGCCACATTGAGTTGTGAGGATAGTCTGGGATTGATGTCAGCAATATCAAGGGCAGTAGGGTCGGTGAAAACCAAAGTGGTAAAGGCTGAGATTGTGAGTGTGGGAGGGAGAACCAGAAGTGTGTTGTGGGTGCAAGGTCTTGGAACTGATGGTATGGGGATGCTCAAGAGCTCTTTGAAGATTGCCATGCACAAGCCAGCCTTTAAGATGCGCCATTCTACTCAGTAA 687 0.4367 MVFLRQGMQHVRSYYNSEAQMIRGGFPQPFISRTNKTSFLKPRSKAEIKVVAAKKHSEAEKRRRMRINGQYETLRAILPNLIKHGEIDFVMNQQKDKASVLAETIKQVKELKKKVSKLEQDSYGNSSKDVVKFPSGADRLNLEKCNNEEGLVKATLSCEDSLGLMSAISRAVGSVKTKVVKAEIVSVGGRTRSVLWVQGLGTDGMGMLKSSLKIAMHKPAFKMRHSTQ 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01338 228 Gene3D - 51 123 IPR036638 GO:0046983
Spst2g01338 228 Coils Coil 101 121 - -
Spst2g01338 228 Pfam Helix-loop-helix DNA-binding domain 55 111 IPR011598 GO:0046983
Spst2g01338 228 SMART finulus 57 117 IPR011598 GO:0046983
Spst2g01338 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 120 IPR036638 GO:0046983
Spst2g01338 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 111 IPR011598 GO:0046983
Spst2g01338 228 PANTHER TRANSCRIPTION FACTOR BHLH30 33 220 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01338 Spst-Chr2 12085868 12087018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01338 50 197 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 37.748 4.43e-22 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst2g01338 HLH 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01338 - - gmx:102667782 324.709