Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01299 ATGGCATCGCAACCAGAACTTGAGCATCCTAGGAAGGCCTTCGGATGGGCAGCTAGGGATCCTTCTGGTCTTCTCTCCCCTTTCAATTTCTCCAGAAGGGAAGTGGGTGAGAAAGATGTGGCATTCAAAGTATTGTACTGTGGGATATGCCACTCGGATCTCCACAGCTTGAAGAACGAATGGGGCAATTCCATCTATCCAATAGTTCCTGGGCATGAAGTAGCTGGTGTAGTGACAGAGGTGGGAAGCAAAGTGGAAAAGTTCAAAGTTGGGGACAAGGTGGGTGTGGGATGCTTGGTTGATTCCTGTCGTACCTGCCACAGCTGTTCTGACAATCTTGAGAATTATTGTCCACAATTTACTCTCACATATGGTGCCAAATATAGAGATAGCACCATCACATATGGAGGCTACTCTGATTCAATGGTTGCGGATGAACATTTTGTGATTCGCATTCCTGAAGGCTTACCACTTGATGCTGCTGCACCTCTCCTTTGTGCTGGGATCACAGTGTATAGCCCTCTCAGATATTTTGAACTAGACAAGCCTGGTCTTCATGTGGGTGTGGTTGGTCTCGGTGGACTAGGCCATATGGCTGTGAAGTTTGCCAAAGCTTTTAGGGCTAAGGTCACAATAATAAGTACATCACCCAATAAAAAGGAGGAAGCAATACAACATCTCGGAGCTGACTCTTTTCTGATAAGCCGTGACGTAGATCAGATGCAGGCTGCTAAGGGTAGTTTGGATGGCATTATTGACACAGTTTCTGCCGCTCATCCTCTCTTACCTCTCATTGATTTGCTCAAGTCTCAGGGAAAGCTTGTAATGGTTGGTGCACCAGACAAGCCTCTGGAGCTGCCAATATTTCCTTTACTTGCAGGGAGAAAGATAGTAGCTGGAAGCCTTGTTGGAGGGTTAAAGGAGACGCAAGAAATGATTGATTTTGCAGCGAAACACAATGTAAAACCTGATATTGAAGTTATTCCTATGGACTATGTCAACACAGCAATGAAACGCCTCGTCAAAGCAGATGTTAAATATCGATTTGTGATTGACATTGGAAACACACTGAAACCTTATTGA 1083 0.4506 MASQPELEHPRKAFGWAARDPSGLLSPFNFSRREVGEKDVAFKVLYCGICHSDLHSLKNEWGNSIYPIVPGHEVAGVVTEVGSKVEKFKVGDKVGVGCLVDSCRTCHSCSDNLENYCPQFTLTYGAKYRDSTITYGGYSDSMVADEHFVIRIPEGLPLDAAAPLLCAGITVYSPLRYFELDKPGLHVGVVGLGGLGHMAVKFAKAFRAKVTIISTSPNKKEEAIQHLGADSFLISRDVDQMQAAKGSLDGIIDTVSAAHPLLPLIDLLKSQGKLVMVGAPDKPLELPIFPLLAGRKIVAGSLVGGLKETQEMIDFAAKHNVKPDIEVIPMDYVNTAMKRLVKADVKYRFVIDIGNTLKPY 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01299 360 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Spst2g01299 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 322 IPR036291 -
Spst2g01299 360 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Spst2g01299 360 CDD CAD1 14 352 IPR047109 GO:0016616
Spst2g01299 360 Gene3D - 16 353 - -
Spst2g01299 360 PANTHER ALDEHYDE REDUCTASE 5 356 IPR047109 GO:0016616
Spst2g01299 360 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Spst2g01299 360 FunFam Putative cinnamyl alcohol dehydrogenase 6 324 353 - -
Spst2g01299 360 Gene3D - 167 323 - -
Spst2g01299 360 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Spst2g01299 360 FunFam Cinnamyl alcohol dehydrogenase 167 323 - -
Spst2g01299 360 SUPERFAMILY GroES-like 9 199 IPR011032 -
Spst2g01299 360 FunFam Uncharacterized protein 16 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01299 Spst-Chr2 11671997 11673592 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01299 11 359 Monolignol Biosynthesis Gene Families AT4G37990 70.774 3.18e-174 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01299 K23232 - gmx:100816901 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst2g01299 2 11671997 11673592 Spst2g01299 2 11671997 11673592 ECH