Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01297 ATGAAGGCGAGATATTGTTTGATTCCAATTCCAATAGTTAGAAGAGTTTCGAAGACCACTTCTCCTCTTGCAGTCAAGCTGCATGCCGATAATCAGCAGGTTGTGATTGGCAATGGCATAGTTTCCCTCAATTTGTCAAATCCCGAAGGCTATATCATTGGACTGTACAATTCTGGAAGTGACAATATACTTGCGCAAAAAAATGAGGAAATTGATAGAGGGTACTTGGATGTTGTTTGGAACGACGCAGGAAAACCTGGGGTGTTTGAGAGAATCCATGGGACAAATTACTCAGTCATTGAAGCAAACGATGACATAGTGGAGGTTTCATTTGTAAAAACATGGAAAACCTCCATGAAAGGCTCAAGTGTCCCCATAATCATAGACCAAAGGTATATATTGCGAAGAGGTGATTCTGGGTTTTATTCGTACGCAATATTTACTCGTCCACCAGGATTACCTGCAGTGGTTGTTTATCAGATTAGGATTGTTTACAAACTCGACGATGCCAGGTTCCACTATATGGCCATATCCGATACTAGGCAAAGGAAAATGCCAACTATGGAAGATAGAACTACGGGTCAACCACTGGCGTATCCTGAAGCTGTTCTCTTAACCCATGCTTCTGATCCAGATATTCGAGGAGAGGTTGATGACAAATACCAATACTCGTGTGACAACAAAGATAACTCTCTACATGGGTGGATTACGAAGGATGATTCAGCACCTGTGGGTTTCTGGGTGATAACTCCCAGTAATGAGTTCCGCAATGGTGGTCCCACTAAGCAAGACCTCACTTCTCATGTTGGACCAACTTCTCTTTCCATGTTTACTAGCACTCATTATGGTGGCAAGAAGGTAATCATTTCATTTGATGAAGGGGAGACTTACAAAAAGGTTTTTGGACCAATTTTTGTTTACCTTAACTCTGCTCCAAGCCAAACTCAGTTTAAGTCTCTGTGGTCAGATGCTGTAGAAAAGTTATCCACTGAAGTAGGAAAATGGCCATATGATTTCATTGGATCAAAAGATTTCATTCCACCCAATCAACGGGGAGCAGTTTCAGGACAACTTCAAGTCCAAGATAGGGGAGGGAAAGCTCAACCAGCTAGCAATTCTTACATTGGTCTAGCTTTACCTGGAAATGCAGGATCATGGCAAGAAGAAAGCAAGGGTTATCAATTCTGGACTCAAACTGAAAAAGATGGAAGCTTCTCAATCAAAAATATTGTGCCTGGGGATTACAACCTGTATTCATGGGTTCCTGGTTTTATAGGGGATTATAAATATAAAACTACTATTACCATCAAACCAGGAGGCCACATCAACTTGGGTTCCCTTGTATACAATCCACCAAGAAATGGTCCTACTGTATGGGAAATTGGGATCCCAGATAGGTCAGCTGCAGAGTTCTATGTACCAGACCCTTACTCAAACCTTGTGAACAGATTATACCTAAACGATAGCAAAAACGGGTTTAGGCAATACGGCTTGTGGGCGCGTTACACTGAGTTATATCCAAAAAATGATCTCATTTACACAGTCGGTGTTTCTGACTATCGTAAAGATTGGTTTTATGCTCAAGTTACCAGGAGCACAGCAACCAGCTCATTGCCAACGACATGGCAGATTCGATTCCAGCTTCAAAATGTCATAACGGGAAACTACACACTACAATTGGCCATGGCATCCGCCACTAATTCTAAATTGGAGATTACGTTCAACAACCCGAAAGCAACGGCTTACGAATTGTCAACAGAGCTAATTGGCGATGACAATACCATTGCAAGGCACGGCATCCATGGATTGTATAAGTTATATGCTGTAGTTGTAGATAGTAATCATTTGGTGAAAGGAAAGAACATCATCTATTTGACACAATCAGTTGCTAAAACTCTTTTCGAAGGAATTATGTATGATTATATCCGCTTAGAGAGTCCTCCAACGACTAAACATACTTGA 1962 0.4134 MKARYCLIPIPIVRRVSKTTSPLAVKLHADNQQVVIGNGIVSLNLSNPEGYIIGLYNSGSDNILAQKNEEIDRGYLDVVWNDAGKPGVFERIHGTNYSVIEANDDIVEVSFVKTWKTSMKGSSVPIIIDQRYILRRGDSGFYSYAIFTRPPGLPAVVVYQIRIVYKLDDARFHYMAISDTRQRKMPTMEDRTTGQPLAYPEAVLLTHASDPDIRGEVDDKYQYSCDNKDNSLHGWITKDDSAPVGFWVITPSNEFRNGGPTKQDLTSHVGPTSLSMFTSTHYGGKKVIISFDEGETYKKVFGPIFVYLNSAPSQTQFKSLWSDAVEKLSTEVGKWPYDFIGSKDFIPPNQRGAVSGQLQVQDRGGKAQPASNSYIGLALPGNAGSWQEESKGYQFWTQTEKDGSFSIKNIVPGDYNLYSWVPGFIGDYKYKTTITIKPGGHINLGSLVYNPPRNGPTVWEIGIPDRSAAEFYVPDPYSNLVNRLYLNDSKNGFRQYGLWARYTELYPKNDLIYTVGVSDYRKDWFYAQVTRSTATSSLPTTWQIRFQLQNVITGNYTLQLAMASATNSKLEITFNNPKATAYELSTELIGDDNTIARHGIHGLYKLYAVVVDSNHLVKGKNIIYLTQSVAKTLFEGIMYDYIRLESPPTTKHT 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01297 653 Pfam Polysaccharide lyase family 4, domain III 457 644 IPR029411 -
Spst2g01297 653 Gene3D - 346 445 - -
Spst2g01297 653 FunFam Rhamnogalacturonate lyase B 347 444 - -
Spst2g01297 653 CDD RGL4_C 459 645 - -
Spst2g01297 653 Pfam Rhamnogalacturonate lyase family 22 217 IPR010325 -
Spst2g01297 653 Gene3D - 24 323 IPR014718 GO:0030246
Spst2g01297 653 Pfam Polysaccharide lyase family 4, domain II 372 443 IPR029413 -
Spst2g01297 653 CDD RGL4_N 25 316 - -
Spst2g01297 653 SUPERFAMILY Galactose-binding domain-like 454 645 IPR008979 -
Spst2g01297 653 CDD RGL4_M 350 447 IPR029413 -
Spst2g01297 653 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 29 648 - -
Spst2g01297 653 SUPERFAMILY Starch-binding domain-like 347 445 IPR013784 GO:0030246
Spst2g01297 653 Gene3D - 455 645 - -
Spst2g01297 653 SUPERFAMILY Galactose mutarotase-like 30 313 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01297 Spst-Chr2 11635034 11639110 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01297 21 652 Polysaccharide Lyase AT1G09880 52.632 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01297 K18195 - gmx:100781089 973