LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst2g01295	ATGACTTTGGCTAATGTGAATTCAGCTTTTTTCAATTTCCCCAGTTTTGGTTCAGACACAAAGGACATCACCTTCCAAGGCGATGCCTTTGCATCAAACGGTGTTCTACAGCTTACAAATACTATAAACGGTAGTGCCCTTCCCACCAGTGCCGGAAGAGCCTCTTATGCTGCACCACTGCGCCTTTGGGATGCCAAAAGAGGAGAACTTGCAGGGTTCACCACCACCTTCTCTTTTGTGGTGACACCAACTGGTGCAGGACCTTTTGGCGATGGACTCTCTTTTTTCATTGCACCTTTCCACTCTGACATGCCCCATGACTCAAGTGGTGGATTCCTTGGACTCTTCAGTGCCGATTCAGCTTTCAACGCGTTAAAAAACCAAATAGTGGCTGTTGAGTTTGACTCCTTTGGGAATAAATGGGATCCTGCATCTGCACATATAGGTATTGACATAAACTCCATTGCTTCAACCAAAACTGTACCCTGGCAGAATGGAAATTTCGAGAAATTTATAACAACGTATGCCACTGTGAGTTATGAACCTGTCAAAAAAAAATTAACTGTATTCAGTTACCCTCATAGCCAGGAGAGTCTAAAAAATGTTTCTTCCAGCAGCATCTCGTTTGTGGTTGATTTAAGGACTGTTCTTCCCGAATGGGTTAGCGTTGGCTTCTCTGGTGCCACCGGACACCTGGTTGAGATGAAGTTGGCATATCAGTTGAGGAAACGGCTTTTCATCCACTGCTGGTTTAGAGTGGCTTTGCAGCTCATCTTACTCTTTCTTGGTGCCTGTTCTGAAGAAATATTGCGCAACTATGCATTCAGCCTCAAGCTACATTCAGCCATTATCAGCAACCTTGCACCGAGGCCTCCTCCTCCTCCTCCTGCAGTCAAGCTTACAGAAAATCCTCAGCAGGTGGTGATTGGCAACGGCATGGTATCCTTCAATTTGTCAAAGCCCAAGGGATATATCACTGGAATATATACTGGAATTAACAATGTACTTGACCCTAAAAATAAAGAAAAGGATAGAGGTTACTTGGACGTTGTTTGGAACAAAAAAGGAAAAGCTGGGAAGTTTCAGAGAGTCGATGGGAAAAATTTCTCGGTCATTGTAGCAAACGAGAATATAGTGGAGGTTTCATTTTCAAGAAAATGGACAGCTTCCATGAAAGGCTCAAGTGTGCCCATAAACATAGACCAGAGGTATATTTTGCGAAGAGGCGAATCCGGGTTTTATTCATACGCAATATTTGACAGATCACCACGATTACCTGCGGCGGAGGTTTATCAAATTAGGACTGTTTTCAAACTCAACAAAGCCAGGTTTAAGTACATGGCCATATCCGATGCAAGGCAAAGGAACATGCCTTCTCAGAGAGATAGAGACACGGGTCAACCCTTGGAATATCCTGAAGCTGTTCTCTTATCCCATCCACCTGACTTACAATTTAAGGGAGAGGTAGATGACAAATACCAATACTCAAGTGAGTACAAAGATAGCTGTGTGCATGGTTGGATTGCGAAGGATGAACCAGAAGGTTTTTGGGTGATAACACCAAGTAATGAGTTCCGCAGTGCTGGGCCTATTAAGCAAGACTTGACCTCTCATGTTGGTCCAACTACTCTTTCCATGTTCACGAGCCCTCACTATGGTGGCAAAGATGTAACCATGAATTTTGGTGAAGGGGAGACTTACAAAAAAGTTCTTGGCCCCACTTTTGTTTATCTTAACTCTGCTCCAAACAAAGCTCAGTTTCGGTCTCTGTGGTCAGATGCTGTAAAGCAGTTATCCAATGAAGTCAGAAGATGGCCTTATGATTTCGTTGGATCAAAAGATTTCCTTCCACTCAATCAACGCGGAACAGTGTCAGGACGACTACTTGTCCAAGATGGGGTATGTAAAGCTCAACCTGCTCACAATGCTTACGTTGGACTAGCTTTGCCTGGAGATGCAGGATCATGGCAGAAAGAATGCAAGGGTTATCAATTCTGGACTCAATCTGACAGAGATGGACACTTCTTCATTAAAAATATTGTACCTGGGGGTTACAACTTGTATGCATGGGTTCCTGGCTTTATTGGAGATTATATATATCCAACTAAGATTTCCATCAAACCAGATACCGATCCATTTATGATCAATAGTCCATATTGTATTTGCAATCTCACACTCCAAGAACACCTTGCATTTGCTAACTGCACTCCCCCAGCATCAAATTATCTTGGTAGAAATCCCTCTAATGCTAACCTCGAGACGATGTGCAATAACCCTTCAAGCTTAAATTGGGGAAACATCAACTTGGACTCACTTGTATATAATCCTCCAAGAAATGGTCCGACACTATGGGAAATTGGGATCCCTGATCGCTCAGCTGCGGAATTCTATGTACCAGACCCTAACCCCGAGCTCCGGAACAAATTATACACGAACCTTGGCCCAGACAAGTTTAGGCAATATGGCTTGTGGGCACGTTACAATGAGTTGTATCCAAAATCTGATCTCATTTATACAGTTGGTGTTTCTGACTATCATAAGGATTGGTTTTATGCTCAAGCCCTCAGCAAGAAAGAGATTTGTGCCAACCACATGGCAGATTCATTTCCAGCTTCGAAATATCATAATGCGAGGAAACTACACACTGCAATTGGCCCTTGCGGCTGCCACTTATTCTAG	2679	0.4341	MTLANVNSAFFNFPSFGSDTKDITFQGDAFASNGVLQLTNTINGSALPTSAGRASYAAPLRLWDAKRGELAGFTTTFSFVVTPTGAGPFGDGLSFFIAPFHSDMPHDSSGGFLGLFSADSAFNALKNQIVAVEFDSFGNKWDPASAHIGIDINSIASTKTVPWQNGNFEKFITTYATVSYEPVKKKLTVFSYPHSQESLKNVSSSSISFVVDLRTVLPEWVSVGFSGATGHLVEMKLAYQLRKRLFIHCWFRVALQLILLFLGACSEEILRNYAFSLKLHSAIISNLAPRPPPPPPAVKLTENPQQVVIGNGMVSFNLSKPKGYITGIYTGINNVLDPKNKEKDRGYLDVVWNKKGKAGKFQRVDGKNFSVIVANENIVEVSFSRKWTASMKGSSVPINIDQRYILRRGESGFYSYAIFDRSPRLPAAEVYQIRTVFKLNKARFKYMAISDARQRNMPSQRDRDTGQPLEYPEAVLLSHPPDLQFKGEVDDKYQYSSEYKDSCVHGWIAKDEPEGFWVITPSNEFRSAGPIKQDLTSHVGPTTLSMFTSPHYGGKDVTMNFGEGETYKKVLGPTFVYLNSAPNKAQFRSLWSDAVKQLSNEVRRWPYDFVGSKDFLPLNQRGTVSGRLLVQDGVCKAQPAHNAYVGLALPGDAGSWQKECKGYQFWTQSDRDGHFFIKNIVPGGYNLYAWVPGFIGDYIYPTKISIKPDTDPFMINSPYCICNLTLQEHLAFANCTPPASNYLGRNPSNANLETMCNNPSSLNWGNINLDSLVYNPPRNGPTLWEIGIPDRSAAEFYVPDPNPELRNKLYTNLGPDKFRQYGLWARYNELYPKSDLIYTVGVSDYHKDWFYAQALSKKEICANHMADSFPASKYHNARKLHTAIGPCGCHLF	892

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst2g01295	892	SUPERFAMILY	Concanavalin A-like lectins/glucanases	9	235	IPR013320	-
	Spst2g01295	892	Gene3D	-	617	710	-	-
	Spst2g01295	892	Pfam	Legume lectin domain	11	233	IPR001220	GO:0030246
	Spst2g01295	892	Gene3D	-	297	593	IPR014718	GO:0030246
	Spst2g01295	892	ProSitePatterns	Legume lectins beta-chain signature.	130	136	IPR019825	-
	Spst2g01295	892	Gene3D	-	7	242	-	-
	Spst2g01295	892	SUPERFAMILY	Galactose-binding domain-like	779	854	IPR008979	-
	Spst2g01295	892	CDD	RGL4_N	298	586	-	-
	Spst2g01295	892	ProSitePatterns	Legume lectins alpha-chain signature.	217	226	IPR000985	-
	Spst2g01295	892	Pfam	Polysaccharide lyase family 4, domain III	782	871	IPR029411	-
	Spst2g01295	892	SUPERFAMILY	Galactose mutarotase-like	299	582	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Spst2g01295	892	SUPERFAMILY	Starch-binding domain-like	616	707	IPR013784	GO:0030246
	Spst2g01295	892	Pfam	Polysaccharide lyase family 4, domain II	642	709	IPR029413	-
	Spst2g01295	892	PANTHER	RHAMNOGALACTURONATE LYASE FAMILY PROTEIN	302	858	-	-
	Spst2g01295	892	CDD	lectin_legume_LecRK_Arcelin_ConA	11	235	IPR001220	GO:0030246
	Spst2g01295	892	CDD	RGL4_M	620	709	IPR029413	-
	Spst2g01295	892	Pfam	Rhamnogalacturonate lyase family	303	489	IPR010325	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst2g01295	Spst-Chr2	11610801	11626109	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst2g01295	293	857	Polysaccharide Lyase	AT4G37950	46.783	2.88e-156	472

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst2g01295	K18195		-	gmx:100781089	817.764