Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst2g01291 ATGGGAAGGGGGAAGATTGTGATTGAAAGGATCGACAATTCCACCAGCCGCCAAGTCACTTTCTCAAAGAGGAGAAAGGGATTGATCAAGAAAGCCAAAGAGCTTGCAATCCTCTGTGATGCACAAGTTGGCCTTGTGATATTCTCCAGCACCGGAAAGCTTTACGAATATGCCAGCACCAGTTCTGAGAGATCACGATCAGGCATGTGCTTGGTACATAGAGATTCTTCTGATGCTTGA 240 0.4625 MGRGKIVIERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLVIFSSTGKLYEYASTSSERSRSGMCLVHRDSSDA 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst2g01291 79 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Spst2g01291 79 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Spst2g01291 79 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Spst2g01291 79 CDD MADS_MEF2_like 2 64 IPR033896 GO:0000977|GO:0045944
Spst2g01291 79 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Spst2g01291 79 Gene3D - 13 75 IPR036879 GO:0003677|GO:0046983
Spst2g01291 79 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 63 - -
Spst2g01291 79 SUPERFAMILY SRF-like 2 63 IPR036879 GO:0003677|GO:0046983
Spst2g01291 79 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Spst2g01291 79 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Spst2g01291 79 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst2g01291 Spst-Chr2 11542948 11543536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst2g01291 1 61 MADS-box Gene Family AT4G37940 88.525 8.12e-35 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst2g01291 SRF-TF 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst2g01291 K09264 - gmx:100778427 119.012